RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HOGA1Q86XE5 327 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 NUP37Q8NFH4 326 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 OR13G1Q8NGZ3 307 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 ANGPTL6Q8NI99 470 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 SLC2A8Q9NY64 477 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 POLDIP2Q9Y2S7 368 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 CADP27708 2225 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 ESPL1Q14674 2120 aa13.15□□□□□ -0.31
LIMS1-202ENST00000338045 HMX3A6NHT5 357 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 FUT3P21217 361 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 ERVK11-1P61568 191 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 ADORA2A-AS1P86434 159 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 LINC00596Q86U02 117 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 BATF2Q8N1L9 274 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 SVIPQ8NHG7 77 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 RADILQ96JH8 1075 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 SULT4A1Q9BR01 284 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 FAAP24Q9BTP7 215 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 TLNRD1Q9H1K6 362 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 CXXC4Q9H2H0 198 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 NKIRAS2Q9NYR9 191 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 RCC2Q9P258 522 aaKnown RBP13.14□□□□□ -0.31
LIMS1-202ENST00000338045 FLVCR2Q9UPI3 526 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 DPRXA6NFQ7 191 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 OR7C1O76099 320 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-202ENST00000338045 AMY2AP04746 511 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 HRH1P35367 487 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 CD300CQ08708 224 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 IL13RA2Q14627 380 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 LRP11Q86VZ4 500 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 WFDC8Q8IUA0 241 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 Q8IYB0 196 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 BPIFB2Q8N4F0 458 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 SLC6A7Q99884 636 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 GHITMQ9H3K2 345 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 AK3Q9UIJ7 227 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 PLEKHA6Q9Y2H5 1048 aa13.14□□□□□ -0.31
LIMS1-202ENST00000338045 TPRP12270 2363 aaKnown RBP13.13□□□□□ -0.31
LIMS1-202ENST00000338045 NOS1APO75052 506 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-202ENST00000338045 CRYZL1O95825 349 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 PGA5P0DJD9 388 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 DTYMKP23919 212 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 KLF3P57682 345 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-202ENST00000338045 MAB21L1Q13394 359 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 ZMYND11Q15326 602 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 ACTBL2Q562R1 376 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 VAX1Q5SQQ9 334 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 AKAP14Q86UN6 197 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 FAM58AQ8N1B3 248 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 OR4K15Q8NH41 348 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 HPS1Q92902 700 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 ZNF488Q96MN9 340 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 WFIKKN1Q96NZ8 548 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 NRIP2Q9BQI9 281 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 SLC25A21Q9BQT8 299 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-202ENST00000338045 MSL2Q9HCI7 577 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 IL36RNQ9UBH0 155 aa13.13□□□□□ -0.31
LIMS1-202ENST00000338045 A0A0A6YYJ9 748 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 DISC1C4P0D8 188 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 H3BUI4 141 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 CDIPTO14735 213 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 ARPC1BO15143 372 aaKnown RBP13.12□□□□□ -0.31
LIMS1-202ENST00000338045 PRKACAP17612 351 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 PDCD1Q15116 288 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 MICBQ29980 383 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 C11orf53Q8IXP5 236 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 BEST4Q8NFU0 473 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 LILRB4Q8NHJ6 448 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 PRRT1Q99946 306 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 CMSS1Q9BQ75 279 aaKnown RBP13.12□□□□□ -0.31
LIMS1-202ENST00000338045 GINS4Q9BRT9 223 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 HDHD3Q9BSH5 251 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-202ENST00000338045 CHST6Q9GZX3 395 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 IFT22Q9H7X7 185 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 COQ3Q9NZJ6 369 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 DUSP13Q9UII6 198 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 SCP2D1Q9UJQ7 156 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 NBEAQ8NFP9 2946 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 F5H5P2 479 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 PYCARD-AS1I3L0S3 204 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 PRAF2O60831 178 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 PTBP3O95758 552 aaKnown RBP13.12□□□□□ -0.31
LIMS1-202ENST00000338045 GRPP07492 148 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 SNU13P55769 128 aaKnown RBP13.12□□□□□ -0.31
LIMS1-202ENST00000338045 MZT1Q08AG7 82 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 IDO2Q6ZQW0 420 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 OR13C8Q8NGS7 320 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 OR6F1Q8NGZ6 308 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 RNASE6Q93091 150 aaKnown RBP13.12□□□□□ -0.31
LIMS1-202ENST00000338045 DHRS9Q9BPW9 319 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 ST6GALNAC5Q9BVH7 336 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 ZNF230Q9UIE0 474 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-202ENST00000338045 EDARQ9UNE0 448 aa13.12□□□□□ -0.31
LIMS1-202ENST00000338045 A0A1B0GUH1 482 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 ABCD4O14678 606 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 CD200P41217 278 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 RRAS2P62070 204 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-202ENST00000338045 BSPH1Q075Z2 132 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 BRICD5Q6PL45 260 aa13.11□□□□□ -0.31
LIMS1-202ENST00000338045 VHLLQ6RSH7 139 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms