RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 RHOCP08134 193 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 OR8U9P0C7N5 309 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 PGA4P0DJD7 388 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 PGA3P0DJD8 388 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 ALDH3A1P30838 453 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CEACAM3P40198 252 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 PMELP40967 661 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 OR2B6P58173 313 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 TAS2R39P59534 338 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 IFFO1Q0D2I5 559 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF266Q14584 549 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 MAD2L1BPQ15013 274 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-201ENST00000326004 PON2Q15165 354 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 TAL2Q16559 108 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 ABCA11PQ4W5N1 156 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CCDC122Q5T0U0 273 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 MFSD14CQ5VZR4 134 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 FBXW9Q5XUX1 488 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 DUPD1Q68J44 220 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 FAHD1Q6P587 224 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CD300LGQ6UXG3 332 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 BHLHA15Q7RTS1 189 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CDKL3Q8IVW4 592 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-201ENST00000326004 C17orf78Q8N4C9 275 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CBR4Q8N4T8 237 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 RNF10Q8N5U6 811 aaKnown RBP1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CDRT4Q8N9R6 151 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CYB561A3Q8NBI2 242 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 OR10AD1Q8NGE0 317 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 OR10W1Q8NGF6 305 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 OR6Q1Q8NGQ2 317 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 OR8U1Q8NH10 309 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 OR51A7Q8NH64 312 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 SYNPRQ8TBG9 265 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 TMEM239Q8WW34 195 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 DYDC1Q8WWB3 177 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 NTAN1Q96AB6 310 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 RNF145Q96MT1 663 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 CYTH2Q99418 400 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 ULBP2Q9BZM5 246 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 NSRP1Q9H0G5 558 aaKnown RBP1.95□□□□□ -2.1
HMGB1-201ENST00000326004 C1orf198Q9H425 327 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 SAV1Q9H4B6 383 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-201ENST00000326004 REEP1Q9H902 201 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 PARVGQ9HBI0 331 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 OR2S2Q9NQN1 319 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 INIPQ9NRY2 104 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF355PQ9NSJ1 428 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 RMND1Q9NWS8 449 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 RAB23Q9ULC3 237 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 TENM4Q6N022 2769 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 SPTAN1Q13813 2472 aaKnown RBP1.95□□□□□ -2.1
HMGB1-201ENST00000326004 RFX7Q2KHR2 1363 aa1.95□□□□□ -2.1
HMGB1-201ENST00000326004 GBF1Q92538 1859 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 FBN2P35556 2912 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 DDX60Q8IY21 1712 aaKnown RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 MYO3BQ8WXR4 1341 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 IGSF9BQ9UPX0 1349 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 PHIPQ8WWQ0 1821 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 A0A0B4J2E0 115 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 TMEM223A0PJW6 202 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 ANKRD20A5PA0PJZ0 165 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 LOC730098B7Z3J9 87 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 RNASEK-C17orf49H0YIS7 233 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 H7C417 338 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 DFFAO00273 331 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 CALUO43852 315 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 SCN2BO60939 215 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 ALOX12BO75342 701 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 RDH16O75452 317 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 CBR3O75828 277 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 FADS2O95864 444 aaKnown RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 PTTG1O95997 202 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 GCGP01275 180 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 APOEP02649 317 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 CD37P11049 281 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 IDO1P14902 403 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 MUC1P15941 1255 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 SYT1P21579 422 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 ARR3P36575 388 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 PRLHRP49683 370 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 UBE2E1P51965 193 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 HCCSP53701 268 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 AP1S2P56377 157 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 VSX2P58304 361 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 TAS2R60P59551 318 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 RPL31P62899 125 aaKnown RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 PRR3P79522 188 aaKnown RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 LOXL1Q08397 574 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 C2orf80Q0P641 193 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 SYCNQ0VAF6 134 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 ITGB3BPQ13352 177 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-201ENST00000326004 PMS2P3Q13401 168 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 COTL1Q14019 142 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 RGNQ15493 299 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 WHAMMP3Q1A5X7 153 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 TCEAL5Q5H9L2 206 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 FAM78AQ5JUQ0 283 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 CPTPQ5TA50 214 aa1.94□□□□□ -2.1
HMGB1-201ENST00000326004 KCTD16Q68DU8 428 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms