RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 OR8G3PP0DMU2 310 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 OPN1MW2P0DN77 364 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 OPN1MW3P0DN78 364 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 THBS4P35443 961 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ADPRHP54922 357 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 TCL1AP56279 114 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 JMJD6Q6NYC1 403 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 DEFB119Q8N690 84 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 C17orf47Q8NEP4 570 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 OR4S1Q8NGB4 309 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZNF502Q8TBZ5 544 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 WDR89Q96FK6 387 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 SBF1O95248 1867 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 SCN10AQ9Y5Y9 1956 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 NUP205Q92621 2012 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 FAM181BA6NEQ2 426 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZGLP1P0C6A0 271 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 SKP2Q13309 424 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 DUSP5Q16690 384 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 TMEM241Q24JQ0 296 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 FIGLAQ6QHK4 219 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS35-201ENST00000299138 YRDCQ86U90 279 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 IL17FQ96PD4 163 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 TBL2Q9Y4P3 447 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 F11RQ9Y624 299 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 R4GMQ9 66 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 LOC389332A0A1B0GUA5 103 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 ZNF815PA8K554 130 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 HS3ST1O14792 307 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 SFT2D2O95562 160 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 COX5AP20674 150 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 LSM11P83369 360 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS35-201ENST00000299138 MZT1Q08AG7 82 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 DGAT2L7PQ6IED9 249 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 TMEM108Q6UXF1 575 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 TMEM136Q6ZRR5 245 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 BCDIN3DQ7Z5W3 292 aaKnown RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 C9orf40Q8IXQ3 194 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 PLPP7Q8NBV4 271 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 OR10AD1Q8NGE0 317 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 OR52E1Q8NGJ3 308 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 CYB5D2Q8WUJ1 264 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 RTN4IP1Q8WWV3 396 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 ST8SIA1Q92185 356 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 NXPE3Q969Y0 559 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 INSM2Q96T92 566 aaPredicted RBP5.72□□□□□ -1.49
VPS35-201ENST00000299138 PLEKHF2Q9H8W4 249 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 PSENENQ9NZ42 101 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 PATJQ8NI35 1801 aa5.72□□□□□ -1.49
VPS35-201ENST00000299138 CYC1P08574 325 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 PI3P19957 117 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 BCL3P20749 454 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 ZBTB25P24278 435 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 CCR2P41597 374 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 CSNK1A1P48729 337 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 SUB1P53999 127 aaKnown RBP eCLIP5.71□□□□□ -1.493e-9■■■■■ 27
VPS35-201ENST00000299138 EDDM3BP56851 147 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 SLC35A1P78382 337 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 IGLV3-21P80748 117 aaPredicted RBP5.71□□□□□ -1.49
VPS35-201ENST00000299138 EDDM3AQ14507 147 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 TMEM164Q5U3C3 297 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 RSPO2Q6UXX9 243 aaPredicted RBP5.71□□□□□ -1.49
VPS35-201ENST00000299138 IL22RA1Q8N6P7 574 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 VN1R2Q8NFZ6 395 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 RAB24Q969Q5 203 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 CXorf58Q96LI9 332 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 ISG20L2Q9H9L3 353 aaKnown RBP5.71□□□□□ -1.49
VPS35-201ENST00000299138 C5AR2Q9P296 337 aa5.71□□□□□ -1.49
VPS35-201ENST00000299138 SHISA3A0PJX4 238 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 OR2W5A6NFC9 320 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 LANCL1O43813 399 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 MT-CO3P00414 261 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 CA3P07451 260 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 ADH4P08319 380 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 FCGR3AP08637 254 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 AVPR2P30518 371 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 FAM53BQ14153 422 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 GCSAMLQ5JQS6 135 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 KIAA0895LQ68EN5 471 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 MED25Q71SY5 747 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 LHFPL4Q7Z7J7 247 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 PPP1R1CQ8WVI7 109 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 SEH1LQ96EE3 360 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 SMIM8Q96KF7 97 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 TXNIPQ9H3M7 391 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 ZNF430Q9H8G1 570 aaPredicted RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 CORTO00230 105 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 FGF18O76093 207 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 MBPP02686 304 aaPredicted RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 EPHA8P29322 1005 aaPredicted RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 ZNF880Q6PDB4 577 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 ERASQ7Z444 233 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 DAZLQ92904 295 aaKnown RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 R3HDM4Q96D70 268 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 HIST1H4GQ99525 98 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 MIEN1Q9BRT3 115 aa5.71□□□□□ -1.5
VPS35-201ENST00000299138 DNAJB12Q9NXW2 375 aaKnown RBP5.71□□□□□ -1.5
VPS35-201ENST00000299138 WDR90Q96KV7 1748 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms