RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PIGTQ969N2 578 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 MMABQ96EY8 250 aaPredicted RBP11.77□□□□□ -0.53
SKA3-201ENST00000298260 CDCA3Q99618 268 aaPredicted RBP11.77□□□□□ -0.53
SKA3-201ENST00000298260 PITPNC1Q9UKF7 332 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 POLR1DQ9Y2S0 133 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 SSSCA1O60232 199 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 DXOO77932 396 aaKnown RBP11.77□□□□□ -0.53
SKA3-201ENST00000298260 CEACAM6P40199 344 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 ZNF121P58317 390 aaPredicted RBP11.77□□□□□ -0.53
SKA3-201ENST00000298260 GNB2P62879 340 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 PAX5Q02548 391 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 BATFQ16520 125 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 ABCA11PQ4W5N1 156 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 CARD17Q5XLA6 110 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 FAM57BQ71RH2 274 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 OR1P1Q8NH06 330 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 CLDND2Q8NHS1 167 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 BOD1Q96IK1 185 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 SYT3Q9BQG1 590 aa11.77□□□□□ -0.53
SKA3-201ENST00000298260 SHISA7A6NL88 538 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 MS4A18H0YCH9 400 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 H3BP45 60 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 ST8SIA3O43173 380 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 PHF1O43189 567 aaPredicted RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 HLA-HP01893 362 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 ELLP55199 621 aaPredicted RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 RAB4BP61018 213 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 ZFP36L1Q07352 338 aaKnown RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 FUT7Q11130 342 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 CLN3Q13286 438 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 MS4A18Q3C1V0 323 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 NOL4LQ96MY1 436 aaPredicted RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 URM1Q9BTM9 101 aaKnown RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 ELOVL1Q9BW60 279 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 ZNF665Q9H7R5 613 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 KIAA1456Q9P272 454 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 SUSD2Q9UGT4 822 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 GOLT1BQ9Y3E0 138 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 NCOA6Q14686 2063 aaPredicted RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 CPAMD8Q8IZJ3 1885 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 NKX2-6A6NCS4 301 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 NPIPA5E9PKD4 350 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 H3BML4 177 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 DVL1O14640 695 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 ANGPTL7O43827 346 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 PPM1FP49593 454 aaPredicted RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 TDGF1P3P51864 188 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 RPS21P63220 83 aaKnown RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 FOXF1Q12946 379 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 RTP5Q14D33 572 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 CXorf66Q5JRM2 361 aaPredicted RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 FAM90A2PQ658T7 463 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 CRIP3Q6Q6R5 217 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 LCN15Q6UWW0 184 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 TSLPQ969D9 159 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 OPN3Q9H1Y3 402 aaPredicted RBP11.76□□□□□ -0.53
SKA3-201ENST00000298260 SEMA5BQ9P283 1151 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 NPIPA1Q9UND3 350 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 LAMP3Q9UQV4 416 aa11.76□□□□□ -0.53
SKA3-201ENST00000298260 CLDN34H7C241 214 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 SCGNO76038 276 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 GP1BBP13224 206 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 GZMHP20718 246 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 TRA2AQ13595 282 aaKnown RBP eCLIP11.75□□□□□ -0.53
SKA3-201ENST00000298260 DMRTA1Q5VZB9 504 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 ZNF66Q6ZN08 573 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 MRPL41Q8IXM3 137 aaKnown RBP11.75□□□□□ -0.53
SKA3-201ENST00000298260 OR2C3Q8N628 320 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 OR13D1Q8NGV5 346 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 VSIRQ9H7M9 311 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 PLEKHJ1Q9NW61 149 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 UNC13CQ8NB66 2214 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 DIDO1Q9BTC0 2240 aaKnown RBP11.75□□□□□ -0.53
SKA3-201ENST00000298260 A0A1W2PR80 420 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 SEMA4FO95754 770 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 CTSDP07339 412 aaPredicted RBP11.75□□□□□ -0.53
SKA3-201ENST00000298260 ZNF154Q13106 437 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 KISS1Q15726 138 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 TAF9Q16594 264 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 FAM185AQ8N0U4 392 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 OR14L1PQ8NHC6 308 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 DTD1Q8TEA8 209 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 C5orf34Q96MH7 638 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 RIMS4Q9H426 269 aaPredicted RBP11.75□□□□□ -0.53
SKA3-201ENST00000298260 DOCK11Q5JSL3 2073 aa11.75□□□□□ -0.53
SKA3-201ENST00000298260 PROB1E7EW31 1015 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 TMEM50AO95807 157 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 SCGB1D1O95968 90 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 ZNF728P0DKX0 622 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 PGCP20142 388 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 DYNLT3P51808 116 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 BIDP55957 195 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 ZNF705AQ6ZN79 300 aaPredicted RBP11.74□□□□□ -0.53
SKA3-201ENST00000298260 CMTM1Q8IZ96 169 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 BEND2Q8NDZ0 799 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 TP53RKQ96S44 253 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 DIRC2Q96SL1 478 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 NAA60Q9H7X0 242 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 CHST11Q9NPF2 352 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 VDAC3Q9Y277 283 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms