RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FAM90A27PA6NNH2 459 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 CD74P04233 296 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 GRNP28799 593 aaKnown RBP14.03□□□□□ -0.16
USP4-201ENST00000265560 Q6ZPA2 131 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 HRNRQ86YZ3 2850 aaPredicted RBP14.03□□□□□ -0.16
USP4-201ENST00000265560 MAP1AP78559 2803 aaPredicted RBP14.03□□□□□ -0.16
USP4-201ENST00000265560 TRAV39A0A0B4J263 110 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 CCL21O00585 134 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 MAB21L1Q13394 359 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 C4orf46Q504U0 113 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 RGS7BPQ6MZT1 257 aaPredicted RBP14.03□□□□□ -0.16
USP4-201ENST00000265560 ZNF573Q86YE8 665 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 OR2Z1Q8NG97 314 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 MARCH1Q8TCQ1 289 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 RTL8AQ9BWD3 113 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 TREM2Q9NZC2 230 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 VSIG4Q9Y279 399 aa14.03□□□□□ -0.16
USP4-201ENST00000265560 IQCF6A8MYZ5 107 aa14.02□□□□□ -0.16
USP4-201ENST00000265560 OR3A3P47888 321 aa14.02□□□□□ -0.16
USP4-201ENST00000265560 MRGPRGQ86SM5 289 aa14.02□□□□□ -0.16
USP4-201ENST00000265560 OR8G5Q8NG78 346 aa14.02□□□□□ -0.16
USP4-201ENST00000265560 BCL2L14Q9BZR8 327 aa14.02□□□□□ -0.16
USP4-201ENST00000265560 FN3KRPQ9HA64 309 aa14.02□□□□□ -0.16
USP4-201ENST00000265560 NPDC1Q9NQX5 325 aaPredicted RBP14.02□□□□□ -0.16
USP4-201ENST00000265560 EHFQ9NZC4 300 aa14.02□□□□□ -0.16
USP4-201ENST00000265560 UTP20O75691 2785 aaKnown RBP14.02□□□□□ -0.17
USP4-201ENST00000265560 C7orf66A4D0T2 115 aa14.02□□□□□ -0.17
USP4-201ENST00000265560 NKX2-6A6NCS4 301 aa14.02□□□□□ -0.17
USP4-201ENST00000265560 SIX6O95475 246 aa14.02□□□□□ -0.17
USP4-201ENST00000265560 MRPS15P82914 257 aaKnown RBP14.02□□□□□ -0.17
USP4-201ENST00000265560 ZCCHC24Q8N2G6 241 aaKnown RBP14.02□□□□□ -0.17
USP4-201ENST00000265560 OCSTAMPQ9BR26 566 aa14.02□□□□□ -0.17
USP4-201ENST00000265560 OR14J1Q9UGF5 321 aa14.02□□□□□ -0.17
USP4-201ENST00000265560 SCP2D1Q9UJQ7 156 aa14.02□□□□□ -0.17
USP4-201ENST00000265560 OR5B21A6NL26 309 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 SERPINE3A8MV23 424 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 SSBP1Q04837 148 aaKnown RBP14.01□□□□□ -0.17
USP4-201ENST00000265560 PNLIPRP3Q17RR3 467 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 C2orf68Q2NKX9 166 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 ATPAF1Q5TC12 328 aaPredicted RBP14.01□□□□□ -0.17
USP4-201ENST00000265560 LIN54Q6MZP7 749 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 SEZ6L2Q6UXD5 910 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 ZSCAN4Q8NAM6 433 aaPredicted RBP14.01□□□□□ -0.17
USP4-201ENST00000265560 OR5H2Q8NGV7 314 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 PPP1R14BQ96C90 147 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 TUBD1Q9UJT1 453 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 hCG_1807616A0A1W2PRN6 198 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 TMEM82A0PJX8 343 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 PDCD6O75340 191 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 AKR1C4P17516 323 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 FAM189A2Q15884 450 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 CHRFAM7AQ494W8 412 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 BOLLQ8N9W6 283 aaKnown RBP14.01□□□□□ -0.17
USP4-201ENST00000265560 ADAD2Q8NCV1 583 aaKnown RBP14.01□□□□□ -0.17
USP4-201ENST00000265560 UBALD1Q8TB05 177 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 FAM122AQ96E09 287 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 BOD1Q96IK1 185 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 NUDT16L1Q9BRJ7 211 aaKnown RBP14.01□□□□□ -0.17
USP4-201ENST00000265560 CA10Q9NS85 328 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 PRR13Q9NZ81 148 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 MEMO1Q9Y316 297 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 DISC1C4P0D8 188 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 ABCD4O14678 606 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 THBDP07204 575 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 FUT3P21217 361 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 CD40P25942 277 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 FGF12P61328 243 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 ZFP69Q49AA0 526 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 FAM58AQ8N1B3 248 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 MUC20Q8N307 709 aaPredicted RBP14.01□□□□□ -0.17
USP4-201ENST00000265560 OR5T2Q8NGG2 359 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 CHMP1AQ9HD42 196 aaPredicted RBP14.01□□□□□ -0.17
USP4-201ENST00000265560 IL36GQ9NZH8 169 aa14.01□□□□□ -0.17
USP4-201ENST00000265560 SIRPB1O00241 398 aa14□□□□□ -0.17
USP4-201ENST00000265560 SPRY3O43610 288 aa14□□□□□ -0.17
USP4-201ENST00000265560 ZNF44P15621 663 aa14□□□□□ -0.17
USP4-201ENST00000265560 ADAM5Q6NVV9 412 aa14□□□□□ -0.17
USP4-201ENST00000265560 GLDNQ6ZMI3 551 aaPredicted RBP14□□□□□ -0.17
USP4-201ENST00000265560 WFIKKN1Q96NZ8 548 aa14□□□□□ -0.17
USP4-201ENST00000265560 PRORYQ9H606 182 aa14□□□□□ -0.17
USP4-201ENST00000265560 SLC22A25Q6T423 547 aa14□□□□□ -0.17
USP4-201ENST00000265560 SLC36A1Q7Z2H8 476 aa14□□□□□ -0.17
USP4-201ENST00000265560 HOGA1Q86XE5 327 aa14□□□□□ -0.17
USP4-201ENST00000265560 ZSCAN5BA6NJL1 495 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 NXPH2O95156 264 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 ARPC4P59998 168 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 DMRTA2Q96SC8 542 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 LIME1Q9H400 295 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 DPRXA6NFQ7 191 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 J3QT63 122 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 FCGR3AP08637 254 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 BSPH1Q075Z2 132 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 MEF2DQ14814 521 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 PCSK4Q6UW60 755 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 DRAXINQ8NBI3 349 aaPredicted RBP13.99□□□□□ -0.17
USP4-201ENST00000265560 OR13G1Q8NGZ3 307 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 LINC01560Q8TB33 94 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 MRPS24Q96EL2 167 aaKnown RBP13.99□□□□□ -0.17
USP4-201ENST00000265560 VKORC1Q9BQB6 163 aa13.99□□□□□ -0.17
USP4-201ENST00000265560 FABP7O15540 132 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms