RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 SLC7A11Q9UPY5 501 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 PRELID1Q9Y255 219 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 U3KQ87 197 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 MPC2O95563 127 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 PPP3CBP16298 524 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 HIST1H1DP16402 221 aaKnown RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 CXCL2P19875 107 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 FKBP2P26885 142 aaKnown RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 ARHGDIBP52566 201 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 LSM6P62312 80 aaKnown RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 PLP2Q04941 152 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 ECH1Q13011 328 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 PHLDA2Q53GA4 152 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 C1orf100Q5SVJ3 147 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 CPNE4Q96A23 557 aaPredicted RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 PRRT1Q99946 306 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 SLCO5A1Q9H2Y9 848 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 FANCFQ9NPI8 374 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 PTTG3PQ9NZH4 202 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 PRSS50Q9UI38 385 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF587BE7ETH6 402 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 GEMIN2O14893 280 aaKnown RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 LYZL6O75951 148 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 IFNA7P01567 189 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 FSTP19883 344 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 IDH3GP51553 393 aaPredicted RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 GPM6AP51674 278 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 RAP2BP61225 183 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 SEC61A1P61619 476 aaKnown RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 GK2Q14410 553 aaPredicted RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 SPIN3Q5JUX0 258 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 FAM27BQ5VT28 67 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 FAM166AQ6J272 317 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF474Q6S9Z5 364 aaPredicted RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 NUFIP2Q7Z417 695 aaKnown RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 OR56B2PQ8NGI1 322 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 OR13C8Q8NGS7 320 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 FBXW5Q969U6 566 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 NABP1Q96AH0 204 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 NTNG2Q96CW9 530 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF488Q96MN9 340 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 CMSS1Q9BQ75 279 aaKnown RBP7.45□□□□□ -1.22
VPS4B-201ENST00000238497 RNF122Q9H9V4 155 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 UBQLN2Q9UHD9 624 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 MAB21L2Q9Y586 359 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 OTOGQ6ZRI0 2925 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 HCFC1P51610 2035 aa7.45□□□□□ -1.22
VPS4B-201ENST00000238497 FLNAP21333 2647 aaKnown RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 TRAV39A0A0B4J263 110 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 HS3ST1O14792 307 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 BET1O15155 118 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 HAAOP46952 286 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 RBP2P50120 134 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 MRPS34P82930 218 aaKnown RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 TMEM229BQ8NBD8 167 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 CPEB3Q8NE35 698 aaKnown RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 HIST1H2AAQ96QV6 131 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 GPR160Q9UJ42 338 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 FZR1Q9UM11 496 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 ST3GAL6Q9Y274 331 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 PLCE1Q9P212 2302 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF716A6NP11 495 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 NXPH3O95157 252 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 CRHP06850 196 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 SELEP16581 610 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 ATP1B3P54709 279 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 ELP2Q6IA86 826 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 PPP1R1CQ8WVI7 109 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 GMPPAQ96IJ6 420 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 WFIKKN1Q96NZ8 548 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 PHB2Q99623 299 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 UQCC2Q9BRT2 126 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 OR2H1Q9GZK4 316 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 METTL9Q9H1A3 318 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 PPA2Q9H2U2 334 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 MOB1AQ9H8S9 216 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 UBTD1Q9HAC8 227 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 EDARQ9UNE0 448 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 OR5H14A6NHG9 310 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 F5H0A9 414 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 SIGLEC5O15389 551 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 SSX5O60225 188 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 APOC1P02654 83 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 GSK3AP49840 483 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 ZBTB37Q5TC79 503 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 THOC7Q6I9Y2 204 aaKnown RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 OR2T2Q6IF00 324 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 CXorf67Q86X51 503 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 OR52H1Q8NGJ2 320 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 THAP6Q8TBB0 222 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 RDH5Q92781 318 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 SLAMF9Q96A28 289 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 SLC25A21Q9BQT8 299 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF2Q9BSG1 426 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 PIPOXQ9P0Z9 390 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 OPN4Q9UHM6 478 aa7.44□□□□□ -1.22
VPS4B-201ENST00000238497 RBM7Q9Y580 266 aaKnown RBP7.44□□□□□ -1.22
VPS4B-201ENST00000238497 NPIPB13A6NJU9 1138 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 NPIPB4C9JG80 1138 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 LGALS8O00214 317 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms