RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PSMB10P40306 273 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 IZUMO4Q1ZYL8 232 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 OR10K2Q6IF99 312 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SIGLECL1Q8N7X8 197 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 LILRB4Q8NHJ6 448 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CIB3Q96Q77 187 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 NMNAT2Q9BZQ4 307 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CA10Q9NS85 328 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ANKRD36A6QL64 1941 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 TMEM127O75204 238 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 RPL34P49207 117 aaKnown RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 EMDP50402 254 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 UBE2G1P62253 170 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 RPL7L1Q6DKI1 246 aaKnown RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CORO6Q6QEF8 472 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF546Q86UE3 836 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ADTRPQ96IZ2 230 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 Q96MF0 132 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 PBOV1Q9GZY1 135 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 GDF2Q9UK05 429 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 IGKV3-7A0A075B6H7 116 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 LOC390937A0A1W2PQ73 354 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 LILRA1O75019 489 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ZIC2O95409 532 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SNRNP70P08621 437 aaKnown RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 GPX3P22352 226 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 MDH2P40926 338 aaKnown RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 MS4A2Q01362 244 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CST9LP1Q5W188 147 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 LYSMD2Q8IV50 215 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 C17orf47Q8NEP4 570 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 DYNC2LI1Q8TCX1 351 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 PHOX2BQ99453 314 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 GPR84Q9NQS5 396 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 H3BSA7 217 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 AMY2AP04746 511 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 HTR1DP28221 377 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 GP2P55259 537 aaKnown RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 FUT7Q11130 342 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF154Q13106 437 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SSX9Q7RTT3 188 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 OR6Q1Q8NGQ2 317 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SAT2Q96F10 170 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 C4orf36Q96KX1 117 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 MIEN1Q9BRT3 115 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 C20orf85Q9H1P6 137 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 PARP11Q9NR21 331 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SPANXA1Q9NS26 97 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 RAB22AQ9UL26 194 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 V9GY05 133 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 TICRRQ7Z2Z1 1910 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 LEUTXA8MZ59 168 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 UPK1AO00322 258 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 PAPLNO95428 1278 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 AKAIN1P0CW23 69 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 CCKARP32238 428 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 ARF6P62330 175 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 OXA1LQ15070 435 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 NSUN5P1Q3KNT7 163 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 TMEM268Q5VZI3 342 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 OR52M1Q8NGK5 317 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 OR1L1Q8NH94 360 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 PP6455Q8WZ26 134 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 C7orf34Q96L11 122 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 FAAP24Q9BTP7 215 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 SDR39U1Q9NRG7 319 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-218ENST00000640036 PTPRFP10586 1907 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 A0A1W2PRX2 142 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 A0A1W2PS18 150 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 PPP5D1E7EU14 171 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 IL18BPO95998 194 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 NGFP01138 241 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 HPNP05981 417 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 COX6CP09669 75 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 MYF6P23409 242 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 GIFP27352 417 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 BSGP35613 385 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 VDAC2P45880 294 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-218ENST00000640036 TAS2R19P59542 299 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 P2RY14Q15391 338 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 COX19Q49B96 90 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 RNFT1Q5M7Z0 435 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 ACSM6Q6P461 480 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 PRSS41Q7RTY9 318 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 LRRC28Q86X40 367 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-218ENST00000640036 OR4C5Q8NGB2 326 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 DDB2Q92466 427 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 AAMDCQ9H7C9 122 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 DCAF16Q9NXF7 216 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 ASB1Q9Y576 335 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 A0A0A6YYH2 397 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 A6NJ64 397 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 INMT-MINDY4F8WBC2 141 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 CYTIPO60759 359 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 APOC3P02656 99 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 GABRB3P28472 473 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 CDKN1AP38936 164 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 ETV1P50549 477 aa4.43□□□□□ -1.7
SCN1A-218ENST00000640036 HIKESHIQ53FT3 197 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms