RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LINC00312Q9Y6C7 94 aa11.33□□□□□ -0.6
CLN3-249ENST00000636685 TMEM82A0PJX8 343 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 J3QT63 122 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 PSMD9O00233 223 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 NOS1APO75052 506 aaPredicted RBP11.32□□□□□ -0.6
CLN3-249ENST00000636685 DCTN3O75935 186 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 IGLV1-47P01700 117 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 FAM106CPP0CH98 169 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 IGHV4-30-4P0DP06 118 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 CLUP10909 449 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 HAAOP46952 286 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 GPR50Q13585 617 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 ASPHD1Q5U4P2 390 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 PLCXD3Q63HM9 321 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 KRT74Q7RTS7 529 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 OR8H2Q8N162 312 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 SLC37A3Q8NCC5 494 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 OR8B12Q8NGG6 310 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 OR6K6Q8NGW6 343 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 ZNF596Q8TC21 504 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 C4orf3Q8WVX3 66 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 HES4Q9HCC6 221 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 NDUFAF4Q9P032 175 aa11.32□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A18PA6NE21 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A16PA6NEW6 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A20PA6NIJ5 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A9PA6NNJ1 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A12PA8MX19 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A5PA8MXJ8 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 LY6LH3BQJ8 138 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 CXCR6O00574 342 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 SLC25A17O43808 307 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 SERPINA1P01009 418 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 H2BFMP0C1H6 154 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A15PP0C7V4 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A13PP0C7W8 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A14PP0C7W9 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM90A24PP0C7X0 464 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 MNDAP41218 407 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 POU3F4P49335 361 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FOXE3Q13461 319 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 HNF4GQ14541 408 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 RTN4RL2Q86UN3 420 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 RNF152Q8N8N0 203 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 TRMT10AQ8TBZ6 339 aaKnown RBP11.31□□□□□ -0.6
CLN3-249ENST00000636685 ZNF286AQ9HBT8 521 aa11.31□□□□□ -0.6
CLN3-249ENST00000636685 FAM32AQ9Y421 112 aaKnown RBP11.31□□□□□ -0.6
CLN3-249ENST00000636685 H3BSH0 61 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 BUB1B-PAK6H3BSN5 160 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 MRASO14807 208 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 SAP30O75446 220 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 LY6G6CO95867 125 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 TMEM11P17152 192 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 SPI1P17947 270 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 RHCEP18577 417 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 GDNFP39905 211 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 CEACAM3P40198 252 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 MAP2K3P46734 347 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 BNIP1Q12981 228 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 HES1Q14469 280 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 HLA-DRB5Q30154 266 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 SATL1Q86VE3 508 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 OR6N2Q8NGY6 317 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 OR56B4Q8NH76 319 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 IL17DQ8TAD2 202 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 EGLN3Q9H6Z9 239 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 C19orf73Q9NVV2 129 aa11.3□□□□□ -0.6
CLN3-249ENST00000636685 AP4M1O00189 453 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 FGF16O43320 207 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 IFNA6P05013 189 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 ELANEP08246 267 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 CRMP1Q14194 572 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 RBM39Q14498 530 aaKnown RBP11.29□□□□□ -0.6
CLN3-249ENST00000636685 CGB2Q6NT52 195 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 CCDC144NLQ6NUI1 221 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 TRAPPC6BQ86SZ2 158 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 ZNF573Q86YE8 665 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 THNSL2Q86YJ6 484 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.29□□□□□ -0.6
CLN3-249ENST00000636685 ERI1Q8IV48 349 aaKnown RBP11.29□□□□□ -0.6
CLN3-249ENST00000636685 OR52N4Q8NGI2 321 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 DCUN1D4Q92564 292 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 SNX22Q96L94 193 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 DHRS1Q96LJ7 313 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 NMNAT2Q9BZQ4 307 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 CHST6Q9GZX3 395 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 CMTM6Q9NX76 183 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 POLDIP2Q9Y2S7 368 aa11.29□□□□□ -0.6
CLN3-249ENST00000636685 F8VVB4 439 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 F8VWA3 439 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 TOR1AO14656 332 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 NPPAP01160 153 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 IGHA1P01876 353 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 OR8U8P0C7N1 319 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 CDK2P24941 298 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 GSSP48637 474 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 RASSF2P50749 326 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 ERVK11-1P61568 191 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 GRK1Q15835 563 aa11.28□□□□□ -0.6
CLN3-249ENST00000636685 HAGHQ16775 308 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms