RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TMEM95Q3KNT9 176 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 ZNF626Q68DY1 528 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 Q8N2B8 174 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 RPS4Y2Q8TD47 263 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 MALSU1Q96EH3 234 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 MOB1AQ9H8S9 216 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 CLN6Q9NWW5 311 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 IL36RNQ9UBH0 155 aa13.01□□□□□ -0.33
CLN3-246ENST00000636228 TBL2Q9Y4P3 447 aaKnown RBP13.01□□□□□ -0.33
CLN3-246ENST00000636228 PIN1P1O15428 100 aa13□□□□□ -0.33
CLN3-246ENST00000636228 GYG2O15488 501 aa13□□□□□ -0.33
CLN3-246ENST00000636228 CHRM2P08172 466 aa13□□□□□ -0.33
CLN3-246ENST00000636228 CALCBP10092 127 aa13□□□□□ -0.33
CLN3-246ENST00000636228 DUSP1P28562 367 aa13□□□□□ -0.33
CLN3-246ENST00000636228 ACTR3P61158 418 aa13□□□□□ -0.33
CLN3-246ENST00000636228 EFNB1P98172 346 aa13□□□□□ -0.33
CLN3-246ENST00000636228 ARSJQ5FYB0 599 aaPredicted RBP13□□□□□ -0.33
CLN3-246ENST00000636228 GDPD3Q7L5L3 318 aa13□□□□□ -0.33
CLN3-246ENST00000636228 TCF23Q7RTU1 214 aa13□□□□□ -0.33
CLN3-246ENST00000636228 YIPF7Q8N8F6 280 aa13□□□□□ -0.33
CLN3-246ENST00000636228 OR4S1Q8NGB4 309 aa13□□□□□ -0.33
CLN3-246ENST00000636228 OR11H6Q8NGC7 330 aa13□□□□□ -0.33
CLN3-246ENST00000636228 OR52N4Q8NGI2 321 aa13□□□□□ -0.33
CLN3-246ENST00000636228 TMEM163Q8TC26 289 aa13□□□□□ -0.33
CLN3-246ENST00000636228 MRAPQ8TCY5 172 aa13□□□□□ -0.33
CLN3-246ENST00000636228 SGCDQ92629 289 aa13□□□□□ -0.33
CLN3-246ENST00000636228 CEP19Q96LK0 163 aa13□□□□□ -0.33
CLN3-246ENST00000636228 PKIBQ9C010 78 aa13□□□□□ -0.33
CLN3-246ENST00000636228 PRSS22Q9GZN4 317 aa13□□□□□ -0.33
CLN3-246ENST00000636228 CHST6Q9GZX3 395 aa13□□□□□ -0.33
CLN3-246ENST00000636228 SLC7A11Q9UPY5 501 aa13□□□□□ -0.33
CLN3-246ENST00000636228 POMPQ9Y244 141 aa13□□□□□ -0.33
CLN3-246ENST00000636228 A0A1W2PRX2 142 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 PEX14O75381 377 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 IGHA1P01876 353 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 CCL1P22362 96 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 OR12D2P58182 307 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 ACTA2P62736 377 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 ACTG2P63267 376 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 ACTC1P68032 377 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 ACTA1P68133 377 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 EMX1Q04741 257 aaPredicted RBP12.99□□□□□ -0.33
CLN3-246ENST00000636228 SLC34A1Q06495 639 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 SLX4IPQ5VYV7 408 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 NXNL2Q5VZ03 156 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 Q6ZSR3 168 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 SLC25A26Q70HW3 274 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 CATSPERDQ86XM0 798 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 EGFL6Q8IUX8 553 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 DTX3Q8N9I9 347 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 WIPF2Q8TF74 440 aaPredicted RBP12.99□□□□□ -0.33
CLN3-246ENST00000636228 DNAJC9Q8WXX5 260 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 UTP4Q969X6 686 aaKnown RBP12.99□□□□□ -0.33
CLN3-246ENST00000636228 FOXRED1Q96CU9 486 aaPredicted RBP12.99□□□□□ -0.33
CLN3-246ENST00000636228 NRBF2Q96F24 287 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 ZNF714Q96N38 554 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 WNT10AQ9GZT5 417 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 PLEKHA1Q9HB21 404 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 KRT84Q9NSB2 600 aa12.99□□□□□ -0.33
CLN3-246ENST00000636228 F2RL2O00254 374 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 SYT7O43581 403 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 MMP23AO75900 390 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 KRT8P05787 483 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 HOXB6P17509 224 aaKnown RBP12.98□□□□□ -0.33
CLN3-246ENST00000636228 CD24P25063 80 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 SNU13P55769 128 aaKnown RBP12.98□□□□□ -0.33
CLN3-246ENST00000636228 C12orf73Q69YU5 71 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 NDUFA11Q86Y39 141 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 RDH10Q8IZV5 341 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 OR8H2Q8N162 312 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 ZNF676Q8N7Q3 588 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 NDNFQ8TB73 568 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 BCAS4Q8TDM0 211 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 SLC7A6OSQ96CW6 309 aaPredicted RBP12.98□□□□□ -0.33
CLN3-246ENST00000636228 SNX22Q96L94 193 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 MNTQ99583 582 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 AURKAIP1Q9NWT8 199 aaPredicted RBP12.98□□□□□ -0.33
CLN3-246ENST00000636228 PITPNC1Q9UKF7 332 aa12.98□□□□□ -0.33
CLN3-246ENST00000636228 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLN3-246ENST00000636228 A0A1W2PQL4 384 aaPredicted RBP12.97□□□□□ -0.33
CLN3-246ENST00000636228 DHRS7CA6NNS2 312 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 ZAR1LA6NP61 321 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 XPNPEP2O43895 674 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 ALX3O95076 343 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 GABRR1P24046 479 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 VDAC2P45880 294 aaPredicted RBP12.97□□□□□ -0.33
CLN3-246ENST00000636228 NPBWR2P48146 333 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 FUT6P51993 359 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 GRK1Q15835 563 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 BAIAP2L2Q6UXY1 529 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 EMG1Q92979 244 aaKnown RBP12.97□□□□□ -0.33
CLN3-246ENST00000636228 PHF21AQ96BD5 680 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 PRRG3Q9BZD7 231 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 NECAP2Q9NVZ3 263 aa12.97□□□□□ -0.33
CLN3-246ENST00000636228 RBFOX1Q9NWB1 397 aaKnown RBP12.97□□□□□ -0.33
CLN3-246ENST00000636228 DNAH3Q8TD57 4116 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 IGHV2-26A0A0B4J1V2 119 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 hADV38S2A0JD32 116 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 METTL15A6NJ78 407 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 PSPNO60542 156 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms