RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZNRF1Q8ND25 227 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 TMEM185AQ8NFB2 350 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 PGLYRP3Q96LB9 341 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 SPACA5Q96QH8 159 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 PAK1IP1Q9NWT1 392 aaPredicted RBP17.15■□□□□ 0.34
CLN3-240ENST00000631023 OR14J1Q9UGF5 321 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 MAB21L2Q9Y586 359 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 DSCAML1Q8TD84 2053 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 TRBV5-5A0A0J9YX44 114 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 SELLP14151 372 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 CAPZA1P52907 286 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 PPP3R1P63098 170 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 ACSM1Q08AH1 577 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 KISS1Q15726 138 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 ZNF529Q6P280 563 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 CD177Q8N6Q3 437 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 H1FXQ92522 213 aaKnown RBP17.14■□□□□ 0.33
CLN3-240ENST00000631023 EMG1Q92979 244 aaKnown RBP17.14■□□□□ 0.33
CLN3-240ENST00000631023 RFT1Q96AA3 541 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 UPRTQ96BW1 309 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 OCEL1Q9H607 264 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 CNTD2Q9H8S5 307 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 TAS2R4Q9NYW5 299 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 CKLFQ9UBR5 152 aa17.14■□□□□ 0.33
CLN3-240ENST00000631023 ZNF879B4DU55 563 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 SPRY1O43609 319 aaPredicted RBP17.13■□□□□ 0.33
CLN3-240ENST00000631023 FSHBP01225 129 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 FPR2P25090 351 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 FGF12P61328 243 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 METTL11BQ5VVY1 283 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 SAXO1Q8IYX7 474 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 FAM58AQ8N1B3 248 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 FGFRL1Q8N441 504 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 ZSCAN4Q8NAM6 433 aaPredicted RBP17.13■□□□□ 0.33
CLN3-240ENST00000631023 SGCDQ92629 289 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 THRSPQ92748 146 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 DCTN5Q9BTE1 182 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 CCDC90BQ9GZT6 254 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 RHOFQ9HBH0 211 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 NUP50Q9UKX7 468 aa17.13■□□□□ 0.33
CLN3-240ENST00000631023 F8VVB4 439 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 F8VWA3 439 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 CHRM2P08172 466 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 TMEM225BP0DP42 221 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 RPS11P62280 158 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLN3-240ENST00000631023 IRF3Q14653 427 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 MED22Q15528 200 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 SATL1Q86VE3 508 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 LY6G5BQ8NDX9 201 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 OR5D18Q8NGL1 313 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 OR13C5Q8NGS8 318 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 GPER1Q99527 375 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 TMEM138Q9NPI0 162 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 GLS2Q9UI32 602 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 CUBNO60494 3623 aa17.12■□□□□ 0.33
CLN3-240ENST00000631023 TOX4O94842 621 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 ALDOBP05062 364 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 BCL3P20749 454 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 EEF1B2P24534 225 aaKnown RBP17.11■□□□□ 0.33
CLN3-240ENST00000631023 NPBWR2P48146 333 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 PRSS48Q7RTY5 328 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 CMTM4Q8IZR5 234 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 C8orf46Q8TAG6 207 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 WDFY2Q96P53 400 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 PCGF1Q9BSM1 259 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 FAM234AQ9H0X4 552 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 RBFOX1Q9NWB1 397 aaKnown RBP17.11■□□□□ 0.33
CLN3-240ENST00000631023 DENRO43583 198 aaKnown RBP17.11■□□□□ 0.33
CLN3-240ENST00000631023 TCF21O43680 179 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 ANGPTL7O43827 346 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 CEBPDP49716 269 aaPredicted RBP17.11■□□□□ 0.33
CLN3-240ENST00000631023 ARF6P62330 175 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 BPIFB2Q8N4F0 458 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 MS4A15Q8N5U1 240 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 OR51A2Q8NGJ7 313 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 ZNF418Q8TF45 676 aaPredicted RBP17.11■□□□□ 0.33
CLN3-240ENST00000631023 OR5M11Q96RB7 305 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 SEBOXQ9HB31 216 aaPredicted RBP17.11■□□□□ 0.33
CLN3-240ENST00000631023 LSM2Q9Y333 95 aaKnown RBP17.11■□□□□ 0.33
CLN3-240ENST00000631023 KPTNQ9Y664 436 aa17.11■□□□□ 0.33
CLN3-240ENST00000631023 TRBV23-1A0A0A0MS06 115 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 KDM4BO94953 1096 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 PRKACAP17612 351 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 MAPK3P27361 379 aaPredicted RBP17.1■□□□□ 0.33
CLN3-240ENST00000631023 BDKRB2P30411 391 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 GPR50Q13585 617 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 KIAA2026Q5HYC2 2103 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 KLF17Q5JT82 389 aaPredicted RBP17.1■□□□□ 0.33
CLN3-240ENST00000631023 SPIN3Q5JUX0 258 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 ASPHD2Q6ICH7 369 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 RNF144BQ7Z419 303 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 OR52N4Q8NGI2 321 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 OR14A2Q96R54 314 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 HMG20AQ9NP66 347 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 ONECUT1Q9UBC0 465 aa17.1■□□□□ 0.33
CLN3-240ENST00000631023 A0A0A6YYJ9 748 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 A0A1W2PQ09 198 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 GPX5O75715 221 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 TK1P04183 234 aa17.09■□□□□ 0.33
CLN3-240ENST00000631023 BMXP51813 675 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms