RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 INMTO95050 263 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 ATP6V1G2O95670 118 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 FSHBP01225 129 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 AMY2BP19961 511 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 MYF6P23409 242 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 BMXP51813 675 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 ERVK11-1P61568 191 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 FAM58AQ8N1B3 248 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 BATF2Q8N1L9 274 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 KIR3DL3Q8N743 410 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 ASCC1Q8N9N2 400 aaKnown RBP16.01■□□□□ 0.15
UPF1-212ENST00000601689 OR5D13Q8NGL4 314 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 C22orf15Q8WYQ4 148 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 TMEM106AQ96A25 262 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 ANKRD60Q9BZ19 345 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 MTCH1Q9NZJ7 389 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 ZNF222Q9UK12 451 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 BLOC1S6Q9UL45 172 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 MAB21L2Q9Y586 359 aa16.01■□□□□ 0.15
UPF1-212ENST00000601689 IGKV1-27A0A075B6S5 117 aa16■□□□□ 0.15
UPF1-212ENST00000601689 A0A1B0GW55 424 aa16■□□□□ 0.15
UPF1-212ENST00000601689 CDK1P06493 297 aa16■□□□□ 0.15
UPF1-212ENST00000601689 DUX4L2P0CJ85 424 aa16■□□□□ 0.15
UPF1-212ENST00000601689 DUX4L3P0CJ86 424 aa16■□□□□ 0.15
UPF1-212ENST00000601689 DUX4L4P0CJ87 422 aa16■□□□□ 0.15
UPF1-212ENST00000601689 DUX4L5P0CJ88 424 aa16■□□□□ 0.15
UPF1-212ENST00000601689 DUX4L6P0CJ89 424 aa16■□□□□ 0.15
UPF1-212ENST00000601689 DUX4L7P0CJ90 424 aa16■□□□□ 0.15
UPF1-212ENST00000601689 TMEM225BP0DP42 221 aa16■□□□□ 0.15
UPF1-212ENST00000601689 C21orf33P30042 268 aaPredicted RBP16■□□□□ 0.15
UPF1-212ENST00000601689 VHLP40337 213 aa16■□□□□ 0.15
UPF1-212ENST00000601689 GUCA2AQ02747 115 aa16■□□□□ 0.15
UPF1-212ENST00000601689 KISS1Q15726 138 aa16■□□□□ 0.15
UPF1-212ENST00000601689 DUX4L9Q6RFH8 374 aaPredicted RBP16■□□□□ 0.15
UPF1-212ENST00000601689 SATL1Q86VE3 508 aa16■□□□□ 0.15
UPF1-212ENST00000601689 SAXO1Q8IYX7 474 aa16■□□□□ 0.15
UPF1-212ENST00000601689 LY6G5BQ8NDX9 201 aa16■□□□□ 0.15
UPF1-212ENST00000601689 C8orf46Q8TAG6 207 aa16■□□□□ 0.15
UPF1-212ENST00000601689 ZFAND2BQ8WV99 257 aa16■□□□□ 0.15
UPF1-212ENST00000601689 GHSRQ92847 366 aa16■□□□□ 0.15
UPF1-212ENST00000601689 S100A13Q99584 98 aa16■□□□□ 0.15
UPF1-212ENST00000601689 SLC6A7Q99884 636 aa16■□□□□ 0.15
UPF1-212ENST00000601689 Q9H521 79 aa16■□□□□ 0.15
UPF1-212ENST00000601689 DUX4Q9UBX2 424 aa16■□□□□ 0.15
UPF1-212ENST00000601689 CUBNO60494 3623 aa16■□□□□ 0.15
UPF1-212ENST00000601689 EEF1B2P24534 225 aaKnown RBP15.99■□□□□ 0.15
UPF1-212ENST00000601689 HILS1P60008 231 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 KLF17Q5JT82 389 aaPredicted RBP15.99■□□□□ 0.15
UPF1-212ENST00000601689 SPIN3Q5JUX0 258 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 RNLSQ5VYX0 342 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 DMKNQ6E0U4 476 aaPredicted RBP15.99■□□□□ 0.15
UPF1-212ENST00000601689 GDPD3Q7L5L3 318 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 FAM185AQ8N0U4 392 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 NANOGP1Q8N7R0 232 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 RPS4Y2Q8TD47 263 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 ZDHHC16Q969W1 377 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 RFT1Q96AA3 541 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 TMEM138Q9NPI0 162 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 ZNF69Q9UC07 566 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 RAB26Q9ULW5 256 aa15.99■□□□□ 0.15
UPF1-212ENST00000601689 M0R1W7 72 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 SH2D1BO14796 132 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 SPRY1O43609 319 aaPredicted RBP15.98■□□□□ 0.15
UPF1-212ENST00000601689 RGS9O75916 674 aaPredicted RBP15.98■□□□□ 0.15
UPF1-212ENST00000601689 TK1P04183 234 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 IGHV4-38-2P0DP08 117 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 SELLP14151 372 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 PRKACAP17612 351 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 CELP19835 753 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 MAPK3P27361 379 aaPredicted RBP15.98■□□□□ 0.15
UPF1-212ENST00000601689 RPL31P62899 125 aaKnown RBP15.98■□□□□ 0.15
UPF1-212ENST00000601689 BDH1Q02338 343 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 COL10A1Q03692 680 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 Q499Y3 187 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 XAF1Q6GPH4 301 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 LAIR2Q6ISS4 152 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 C1orf122Q6ZSJ8 110 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 CD177Q8N6Q3 437 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 OR5D18Q8NGL1 313 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 LHX4Q969G2 390 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 SNX22Q96L94 193 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 SPACA5Q96QH8 159 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 SIRPDQ9H106 197 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 ZMAT3Q9HA38 289 aaKnown RBP15.98■□□□□ 0.15
UPF1-212ENST00000601689 SEBOXQ9HB31 216 aaPredicted RBP15.98■□□□□ 0.15
UPF1-212ENST00000601689 ELL3Q9HB65 397 aaPredicted RBP15.98■□□□□ 0.15
UPF1-212ENST00000601689 PCDHB16Q9NRJ7 776 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 FKBP14Q9NWM8 211 aa15.98■□□□□ 0.15
UPF1-212ENST00000601689 IGHV3OR16-10A0A075B7F0 116 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 PNMA8CA0A1B0GUJ8 204 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 FUOMA2VDF0 154 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 HAND1O96004 215 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 TFF1P04155 84 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 ALDOBP05062 364 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 CD1AP06126 327 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 SFTPBP07988 381 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 BCL3P20749 454 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 NCR3LG1Q68D85 454 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 C9orf139Q6ZV77 190 aa15.97■□□□□ 0.15
UPF1-212ENST00000601689 VMO1Q7Z5L0 202 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms