RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, human

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-215	ENST00000601150	RNLS	Q5VYX0	342 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	ZFP41	Q8N8Y5	198 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	C8orf46	Q8TAG6	207 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	TMEM158	Q8WZ71	300 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	GHSR	Q92847	366 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	RFT1	Q96AA3	541 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	WDFY2	Q96P53	400 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	SPACA5	Q96QH8	159 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	SLC6A7	Q99884	636 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	SUCNR1	Q9BXA5	334 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	ZNF69	Q9UC07	566 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	OR14J1	Q9UGF5	321 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	TPRKB	Q9Y3C4	175 aa		13.92	□□□□□ -0.18
TRIM28-215	ENST00000601150	TRAV40	A0A0B4J280	105 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	SPRY1	O43609	319 aa	Predicted RBP	13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	SFTPB	P07988	381 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	MMP9	P14780	707 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	RAB3A	P20336	220 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	VHL	P40337	213 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	ARF6	P62330	175 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	YIF1B	Q5BJH7	314 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	FIP1L1	Q6UN15	594 aa	Known RBP	13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	C22orf15	Q8WYQ4	148 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	EMG1	Q92979	244 aa	Known RBP	13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	TMEM106A	Q96A25	262 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	MDFI	Q99750	246 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	MND1	Q9BWT6	205 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	CDCA4	Q9BXL8	241 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	SIRPD	Q9H106	197 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	ONECUT1	Q9UBC0	465 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	PCDHGB5	Q9Y5G0	923 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	KPTN	Q9Y664	436 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	CUBN	O60494	3623 aa		13.91	□□□□□ -0.18
TRIM28-215	ENST00000601150	IGHV3OR16-10	A0A075B7F0	116 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	TRBV23-1	A0A0A0MS06	115 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	RNF212B	A8MTL3	300 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	MAGEB3	O15480	346 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	RGS9	O75916	674 aa	Predicted RBP	13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	BCL3	P20749	454 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	NPBWR2	P48146	333 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	SLC35A2	P78381	396 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	SRSF2	Q01130	221 aa	Known RBP	13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	PDCD1	Q15116	288 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	KISS1	Q15726	138 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	ZNF529	Q6P280	563 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	USP43	Q70EL4	1123 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	RNF144B	Q7Z419	303 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	SAXO1	Q8IYX7	474 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	CMTM4	Q8IZR5	234 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	KIR3DL3	Q8N743	410 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	OR5D18	Q8NGL1	313 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	OR13C5	Q8NGS8	318 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	CPNE2	Q96FN4	548 aa	Predicted RBP	13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	PGLYRP3	Q96LB9	341 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	TBX15	Q96SF7	602 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	MS4A7	Q9GZW8	240 aa	Predicted RBP	13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	ELL3	Q9HB65	397 aa	Predicted RBP	13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	RBFOX1	Q9NWB1	397 aa	Known RBP	13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	TAS2R4	Q9NYW5	299 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	RAB26	Q9ULW5	256 aa		13.9	□□□□□ -0.18
TRIM28-215	ENST00000601150	TRBV5-5	A0A0J9YX44	114 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	PNMA8C	A0A1B0GUJ8	204 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150		A0A1W2PQ09	198 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	ANGPTL7	O43827	346 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	CD1A	P06126	327 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	CHRM2	P08172	466 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	PPP3R1	P63098	170 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	BDH1	Q02338	343 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150		Q499Y3	187 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	GPR157	Q5UAW9	335 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	ASPHD2	Q6ICH7	369 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	C9orf139	Q6ZV77	190 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	FAM58A	Q8N1B3	248 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	OR51A2	Q8NGJ7	313 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	CNBD2	Q96M20	576 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	JMJD8	Q96S16	334 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	FAM234A	Q9H0X4	552 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	DUSP21	Q9H596	190 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	SEBOX	Q9HB31	216 aa	Predicted RBP	13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	RHOF	Q9HBH0	211 aa		13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	FBN1	P35555	2871 aa	Known RBP	13.89	□□□□□ -0.19
TRIM28-215	ENST00000601150	IGKV1-12	A0A0C4DH73	117 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	KDM4B	O94953	1096 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	VENTX	O95231	258 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	IGKV1D-12	P01611	117 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	TK1	P04183	234 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	TMEM225B	P0DP42	221 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	PRKACA	P17612	351 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	CEL	P19835	753 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	BPIFB3	P59826	476 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	HILS1	P60008	231 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	ZP1	P60852	638 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	RPS11	P62280	158 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	COL10A1	Q03692	680 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	ACSM1	Q08AH1	577 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	DOC2B	Q14184	412 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	TUSC1	Q2TAM9	212 aa		13.88	□□□□□ -0.19
TRIM28-215	ENST00000601150	KRTAP24-1	Q3LI83	254 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms