RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 OR5V1Q9UGF6 321 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 POLQO75417 2590 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 ANKRD17O75179 2603 aaKnown RBP12.04□□□□□ -0.48
UPF1-211ENST00000600868 PPIAL4EA0A075B759 164 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 TMEM272A0A1B0GTI8 110 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 OOEPA6NGQ2 149 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 PPIAL4DF5H284 164 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 LGALS8O00214 317 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 PPIAL4FP0DN26 164 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 GTF2F2P13984 249 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 SNRPBP14678 240 aaKnown RBP12.04□□□□□ -0.48
UPF1-211ENST00000600868 SERPINA2P20848 420 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 DSCR9P59020 149 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 BTG1P62324 171 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 HOXA4Q00056 320 aaPredicted RBP12.04□□□□□ -0.48
UPF1-211ENST00000600868 NHLRC3Q5JS37 347 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 FAM201AQ5SY85 155 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 FIP1L1Q6UN15 594 aaKnown RBP12.04□□□□□ -0.48
UPF1-211ENST00000600868 BATF2Q8N1L9 274 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 OSR2Q8N2R0 312 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 BOLLQ8N9W6 283 aaKnown RBP12.04□□□□□ -0.48
UPF1-211ENST00000600868 TMEM104Q8NE00 496 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 OR51T1Q8NGJ9 327 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 RAB1CQ92928 201 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 PTX4Q96A99 478 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 TIMD4Q96H15 378 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 POM121Q96HA1 1249 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 DCUN1D5Q9BTE7 237 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 SLIRPQ9GZT3 109 aaKnown RBP12.04□□□□□ -0.48
UPF1-211ENST00000600868 SEBOXQ9HB31 216 aaPredicted RBP12.04□□□□□ -0.48
UPF1-211ENST00000600868 NLKQ9UBE8 527 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 RAB22AQ9UL26 194 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 SPATA2Q9UM82 520 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 PPIAL4AQ9Y536 164 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 ETV7Q9Y603 341 aa12.04□□□□□ -0.48
UPF1-211ENST00000600868 ITPR2Q14571 2701 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 ARID1AO14497 2285 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 TRAV38-1A0A0B4J264 116 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 A0A1W2PP11 408 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 C3orf80F5H4A9 247 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 NDUFS8O00217 210 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 PPIHO43447 177 aaKnown RBP12.03□□□□□ -0.48
UPF1-211ENST00000600868 CRTAPO75718 401 aaPredicted RBP12.03□□□□□ -0.48
UPF1-211ENST00000600868 PAHP00439 452 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 KNG1P01042 644 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 IGHV2-70P01814 119 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 MGMTP16455 207 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 PRKACAP17612 351 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 RAB6AP20340 208 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 CD80P33681 288 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 GMFBP60983 142 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 UNC119Q13432 240 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 ZNF146Q15072 292 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 MICBQ29980 383 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 SPIN3Q5JUX0 258 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 SFRP4Q6FHJ7 346 aaPredicted RBP12.03□□□□□ -0.48
UPF1-211ENST00000600868 OR10K2Q6IF99 312 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 DNM1P46Q6ZS02 220 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 LGALS14Q8TCE9 139 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 FAM46BQ96A09 425 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 SEH1LQ96EE3 360 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 KCNK15Q9H427 330 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 ASH1LQ9NR48 2969 aaKnown RBP12.03□□□□□ -0.48
UPF1-211ENST00000600868 DNAJB11Q9UBS4 358 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 WIPI2Q9Y4P8 454 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 NAV2Q8IVL1 2488 aa12.03□□□□□ -0.48
UPF1-211ENST00000600868 A0A075B6Q4 140 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 ZNF205O95201 554 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 MPIG6BO95866 241 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 PSG2P11465 335 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 MDH2P40926 338 aaKnown RBP12.02□□□□□ -0.49
UPF1-211ENST00000600868 GPR6P46095 362 aaPredicted RBP12.02□□□□□ -0.49
UPF1-211ENST00000600868 RBM11P57052 281 aaKnown RBP12.02□□□□□ -0.49
UPF1-211ENST00000600868 RPS27AP62979 156 aaKnown RBP12.02□□□□□ -0.49
UPF1-211ENST00000600868 IL13RA2Q14627 380 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 ZMYND11Q15326 602 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 KCNJ8Q15842 424 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 FAM189A2Q15884 450 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 CARTPTQ16568 116 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 MZT2AQ6P582 158 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 CLEC2AQ6UVW9 174 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 PRSS57Q6UWY2 283 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 LINC00596Q86U02 117 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 LRRC28Q86X40 367 aaPredicted RBP12.02□□□□□ -0.49
UPF1-211ENST00000600868 MUC20Q8N307 709 aaPredicted RBP12.02□□□□□ -0.49
UPF1-211ENST00000600868 OR5H6Q8NGV6 325 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 C10orf105Q8TEF2 133 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 FAM168AQ92567 244 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 Q96M66 194 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 CMTM3Q96MX0 182 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 TM2D1Q9BX74 207 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 TMEM59Q9BXS4 323 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 SELENOIQ9C0D9 397 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 NXF2Q9GZY0 626 aaKnown RBP12.02□□□□□ -0.49
UPF1-211ENST00000600868 BANF2Q9H503 90 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 TMEM165Q9HC07 324 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 IL36RNQ9UBH0 155 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 GLS2Q9UI32 602 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 ST3GAL6Q9Y274 331 aa12.02□□□□□ -0.49
UPF1-211ENST00000600868 A3GALT2U3KPV4 340 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms