RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 H1FXQ92522 213 aaKnown RBP12.58□□□□□ -0.4
LIG1-219ENST00000600055 TMEM106AQ96A25 262 aa12.58□□□□□ -0.4
LIG1-219ENST00000600055 SDSLQ96GA7 329 aa12.58□□□□□ -0.4
LIG1-219ENST00000600055 NKX3-1Q99801 234 aaPredicted RBP12.58□□□□□ -0.4
LIG1-219ENST00000600055 DUSP21Q9H596 190 aa12.58□□□□□ -0.4
LIG1-219ENST00000600055 RBFOX1Q9NWB1 397 aaKnown RBP12.58□□□□□ -0.4
LIG1-219ENST00000600055 IL36RNQ9UBH0 155 aa12.58□□□□□ -0.4
LIG1-219ENST00000600055 SLC25A10Q9UBX3 287 aaPredicted RBP12.58□□□□□ -0.4
LIG1-219ENST00000600055 RPUSD1Q9UJJ7 312 aaKnown RBP12.58□□□□□ -0.4
LIG1-219ENST00000600055 LSM2Q9Y333 95 aaKnown RBP12.58□□□□□ -0.4
LIG1-219ENST00000600055 DENRO43583 198 aaKnown RBP12.57□□□□□ -0.4
LIG1-219ENST00000600055 RGS9O75916 674 aaPredicted RBP12.57□□□□□ -0.4
LIG1-219ENST00000600055 ALX3O95076 343 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 ECDO95905 644 aaPredicted RBP12.57□□□□□ -0.4
LIG1-219ENST00000600055 NDUFB7P17568 137 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 RAB3AP20336 220 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 EPHA1P21709 976 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 ARMCX4Q5H9R4 360 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 ZNF529Q6P280 563 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 MKXQ8IYA7 352 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 TEX29Q8N6K0 151 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 C22orf15Q8WYQ4 148 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 EMG1Q92979 244 aaKnown RBP12.57□□□□□ -0.4
LIG1-219ENST00000600055 DCTN5Q9BTE1 182 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 MND1Q9BWT6 205 aa12.57□□□□□ -0.4
LIG1-219ENST00000600055 A0A1W2PPK0 400 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 ZNF879B4DU55 563 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 RGS10O43665 173 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 KNG1P01042 644 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 CD2P06729 351 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 SFTPBP07988 381 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 IGHV4-38-2P0DP08 117 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 CAPZA1P52907 286 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 SNU13P55769 128 aaKnown RBP12.56□□□□□ -0.4
LIG1-219ENST00000600055 ZP1P60852 638 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 ARF6P62330 175 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 KISS1Q15726 138 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 YIF1BQ5BJH7 314 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 SATL1Q86VE3 508 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 PNLDC1Q8NA58 520 aaKnown RBP12.56□□□□□ -0.4
LIG1-219ENST00000600055 LY6G5BQ8NDX9 201 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 OR52N4Q8NGI2 321 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 UPRTQ96BW1 309 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 OR14A2Q96R54 314 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 PCGF1Q9BSM1 259 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 CCDC90BQ9GZT6 254 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 OCEL1Q9H607 264 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 CNTD2Q9H8S5 307 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 NEK6Q9HC98 313 aa12.56□□□□□ -0.4
LIG1-219ENST00000600055 SOX21Q9Y651 276 aaPredicted RBP12.56□□□□□ -0.4
LIG1-219ENST00000600055 TRAV40A0A0B4J280 105 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 TOX4O94842 621 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 CYB5AP00167 134 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 LIPFP07098 398 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 PPIAL4GP0DN37 164 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 MMP9P14780 707 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 DUSP1P28562 367 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 MAP2K4P45985 399 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 CAV3P56539 151 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 COL10A1Q03692 680 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 ACSM1Q08AH1 577 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 SPHARQ15513 63 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 MED22Q15528 200 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 C11orf91Q3C1V1 193 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 Q499Y3 187 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 RBM48Q5RL73 367 aaKnown RBP12.55□□□□□ -0.4
LIG1-219ENST00000600055 BCL6BQ8N143 479 aaPredicted RBP12.55□□□□□ -0.4
LIG1-219ENST00000600055 FAM58AQ8N1B3 248 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 ZNF561Q8N587 486 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 WDFY2Q96P53 400 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 TBX15Q96SF7 602 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 SLC6A7Q99884 636 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 SIRPDQ9H106 197 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 ZNF69Q9UC07 566 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 NUP50Q9UKX7 468 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 BLOC1S6Q9UL45 172 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 JMJD1CQ15652 2540 aa12.55□□□□□ -0.4
LIG1-219ENST00000600055 WNK2Q9Y3S1 2297 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 TRAV8-7A0A075B6U6 113 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 TRBV5-7A0A0A0MS05 114 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 MAGEA13PA6NCF6 341 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 GABRPO00591 440 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 GPR37O15354 613 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 KDM4BO94953 1096 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 CD1AP06126 327 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 TMEM225BP0DP42 221 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 PRKACAP17612 351 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 IGFBP3P17936 291 aaPredicted RBP12.54□□□□□ -0.4
LIG1-219ENST00000600055 BDH1Q02338 343 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 INSL4Q14641 139 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 PRSS48Q7RTY5 328 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 Q8IYB0 196 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 C8orf46Q8TAG6 207 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 MDFIQ99750 246 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 HMG20AQ9NP66 347 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 ONECUT1Q9UBC0 465 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 LRRC42Q9Y546 428 aa12.54□□□□□ -0.4
LIG1-219ENST00000600055 PIN1P1O15428 100 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 MAGEB3O15480 346 aa12.53□□□□□ -0.4
LIG1-219ENST00000600055 HAND1O96004 215 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms