RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 NOX4Q9NPH5 578 aa11.77□□□□□ -0.53
SHKBP1-217ENST00000598558 ACOT13Q9NPJ3 140 aa11.77□□□□□ -0.53
SHKBP1-217ENST00000598558 SF3B6Q9Y3B4 125 aaKnown RBP11.77□□□□□ -0.53
SHKBP1-217ENST00000598558 LRRC42Q9Y546 428 aa11.77□□□□□ -0.53
SHKBP1-217ENST00000598558 IGHV2-70DA0A0C4DH43 119 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 GABRPO00591 440 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 SC5DO75845 299 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 SFTPBP07988 381 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 HCKP08631 526 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 HSMCR30P0CW71 290 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 DUSP1P28562 367 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 GABARAPL2P60520 117 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 RPS25P62851 125 aaKnown RBP11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 TBCEQ15813 527 aaPredicted RBP11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 SSX1Q16384 188 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 ACSM3Q53FZ2 586 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 BTN2A1Q7KYR7 527 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 LYPD6Q86Y78 171 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 ST8SIA4Q92187 359 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 TMEM203Q969S6 136 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 MGLLQ99685 303 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 BEX2Q9BXY8 128 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 YTHDF1Q9BYJ9 559 aaKnown RBP11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 SHARPINQ9H0F6 387 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 C7orf69Q9H7B7 122 aa11.76□□□□□ -0.53
SHKBP1-217ENST00000598558 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.75□□□□□ -0.533e-7■■□□□ 13.4
SHKBP1-217ENST00000598558 A0A0G2JMP0 313 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 A0A0X1KG70 313 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 KDM4BO94953 1096 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 ALDOBP05062 364 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 CD2P06729 351 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 CPEP16870 476 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 IL13RA1P78552 427 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 MLLT11Q13015 90 aaPredicted RBP11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 GPR50Q13585 617 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 SMIM21Q3B7S5 101 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 CHRFAM7AQ494W8 412 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 KLF17Q5JT82 389 aaPredicted RBP11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 SLC36A1Q7Z2H8 476 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 SATL1Q86VE3 508 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 PHC2Q8IXK0 858 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 MKXQ8IYA7 352 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 LY6G5BQ8NDX9 201 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 OR4M2Q8NGB6 313 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 NUDT16L1Q9BRJ7 211 aaKnown RBP11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 DNTTIP1Q9H147 329 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 OR14J1Q9UGF5 321 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 OR5V1Q9UGF6 321 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 CDC42EP3Q9UKI2 254 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 BLOC1S6Q9UL45 172 aa11.75□□□□□ -0.53
SHKBP1-217ENST00000598558 TMEM82A0PJX8 343 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 J3QLI3 93 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 NDUFB3O43676 98 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 KNG1P01042 644 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 FSHBP01225 129 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 OCMP0CE72 109 aaPredicted RBP11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 TMEM225BP0DP42 221 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 FSTP19883 344 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 BDKRB2P30411 391 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 OR3A4PP47883 348 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 NPY4RP50391 375 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 SNU13P55769 128 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 PDCD1Q15116 288 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 ASCL4Q6XD76 172 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 FAM58AQ8N1B3 248 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 OR10K1Q8NGX5 313 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 UFD1Q92890 307 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 EMG1Q92979 244 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 MED30Q96HR3 178 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 HMG20AQ9NP66 347 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 TMEM138Q9NPI0 162 aa11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 RPUSD1Q9UJJ7 312 aaKnown RBP11.74□□□□□ -0.53
SHKBP1-217ENST00000598558 ZNF737O75373 536 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 CDRT1O95170 752 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 MAS1P04201 325 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 PRKACAP17612 351 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 GATA3P23771 443 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 COL10A1Q03692 680 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 ARMCX4Q5H9R4 360 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 DDI2Q5TDH0 399 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 UBE2UQ5VVX9 321 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 C17orf107Q6ZR85 190 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 ZNF367Q7RTV3 350 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 CEACAM19Q7Z692 300 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 LRRTM1Q86UE6 522 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 SAXO1Q8IYX7 474 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 MS4A15Q8N5U1 240 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 ZSCAN4Q8NAM6 433 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 TNFAIP8L1Q8WVP5 186 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 DCTN5Q9BTE1 182 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 NEK6Q9HC98 313 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 ZNF581Q9P0T4 197 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 SLC25A10Q9UBX3 287 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 FOXJ3Q9UPW0 622 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 SOX21Q9Y651 276 aaPredicted RBP11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 AUP1Q9Y679 476 aa11.73□□□□□ -0.53
SHKBP1-217ENST00000598558 NKX6-3A6NJ46 265 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 PSPNO60542 156 aa11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 MRPS14O60783 128 aaKnown RBP11.72□□□□□ -0.53
SHKBP1-217ENST00000598558 UCHL1P09936 223 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms