RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ZFP41Q8N8Y5 198 aa11.44□□□□□ -0.58
UPF1-205ENST00000598209 TMEM158Q8WZ71 300 aa11.44□□□□□ -0.58
UPF1-205ENST00000598209 WDFY2Q96P53 400 aa11.44□□□□□ -0.58
UPF1-205ENST00000598209 SUCNR1Q9BXA5 334 aa11.44□□□□□ -0.58
UPF1-205ENST00000598209 ANKRD60Q9BZ19 345 aa11.44□□□□□ -0.58
UPF1-205ENST00000598209 SIRPDQ9H106 197 aa11.44□□□□□ -0.58
UPF1-205ENST00000598209 ELL3Q9HB65 397 aaPredicted RBP11.44□□□□□ -0.58
UPF1-205ENST00000598209 SCN3BQ9NY72 215 aa11.44□□□□□ -0.58
UPF1-205ENST00000598209 ZNF281Q9Y2X9 895 aa11.44□□□□□ -0.58
UPF1-205ENST00000598209 A0A0A6YYJ9 748 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 PTGES3LE9PB15 166 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 SULT1B1O43704 296 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 ALX3O95076 343 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 VENTXO95231 258 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 CD2P06729 351 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 HCKP08631 526 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 BCL3P20749 454 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 HSPA13P48723 471 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 WNT4P56705 351 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 TAS2R43P59537 309 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 PDZK1IP1Q13113 114 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 KRTAP24-1Q3LI83 254 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 USP43Q70EL4 1123 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 RNF144BQ7Z419 303 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 Q8IYB0 196 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 BCL6BQ8N143 479 aaPredicted RBP11.43□□□□□ -0.58
UPF1-205ENST00000598209 NANOGP1Q8N7R0 232 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 OR13C5Q8NGS8 318 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 C8orf46Q8TAG6 207 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 GHSRQ92847 366 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 EMG1Q92979 244 aaKnown RBP11.43□□□□□ -0.58
UPF1-205ENST00000598209 DMRTB1Q96MA1 342 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 TBX15Q96SF7 602 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 MS4A7Q9GZW8 240 aaPredicted RBP11.43□□□□□ -0.58
UPF1-205ENST00000598209 TAS2R4Q9NYW5 299 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 ONECUT1Q9UBC0 465 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 ERGIC3Q9Y282 383 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 KPTNQ9Y664 436 aa11.43□□□□□ -0.58
UPF1-205ENST00000598209 PNMA8CA0A1B0GUJ8 204 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 ANGPTL7O43827 346 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 RAB3AP20336 220 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 NPBWR2P48146 333 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 DOC2BQ14184 412 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 GPR157Q5UAW9 335 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 ASPHD2Q6ICH7 369 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 CRIP3Q6Q6R5 217 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 OR51A2Q8NGJ7 313 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 OR5D18Q8NGL1 313 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 SGCDQ92629 289 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 MYDGFQ969H8 173 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 TMEM106AQ96A25 262 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 PGLYRP3Q96LB9 341 aa11.42□□□□□ -0.58
UPF1-205ENST00000598209 RBFOX1Q9NWB1 397 aaKnown RBP11.42□□□□□ -0.58
UPF1-205ENST00000598209 PAK1IP1Q9NWT1 392 aaPredicted RBP11.42□□□□□ -0.58
UPF1-205ENST00000598209 FBN1P35555 2871 aaKnown RBP11.42□□□□□ -0.58
UPF1-205ENST00000598209 TRBV23-1A0A0A0MS06 115 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 IGKV1-12A0A0C4DH73 117 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 TRBV5-5A0A0J9YX44 114 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 A0A1W2PQ09 198 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 IGKV1D-12P01611 117 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 CHRM2P08172 466 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 HILS1P60008 231 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 COL10A1Q03692 680 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 PDCD1Q15116 288 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 KISS1Q15726 138 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 TUSC1Q2TAM9 212 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 YIF1BQ5BJH7 314 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 RNLSQ5VYX0 342 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 ZNF529Q6P280 563 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 FIP1L1Q6UN15 594 aaKnown RBP11.41□□□□□ -0.58
UPF1-205ENST00000598209 C9orf139Q6ZV77 190 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 VMO1Q7Z5L0 202 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 CMTM4Q8IZR5 234 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 FAM58AQ8N1B3 248 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 KIR3DL3Q8N743 410 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 SIGLECL1Q8N7X8 197 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 ASCC1Q8N9N2 400 aaKnown RBP11.41□□□□□ -0.58
UPF1-205ENST00000598209 JMJD8Q96S16 334 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 CDCA4Q9BXL8 241 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 IL36RNQ9UBH0 155 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 TPRKBQ9Y3C4 175 aa11.41□□□□□ -0.58
UPF1-205ENST00000598209 SOX21Q9Y651 276 aaPredicted RBP11.41□□□□□ -0.58
UPF1-205ENST00000598209 CENPVL3A0A0U1RRI6 287 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 MAGEB3O15480 346 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 KDM4BO94953 1096 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 HAND1O96004 215 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 TK1P04183 234 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 CALCBP10092 127 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 PRKACAP17612 351 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 CELP19835 753 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 VHLP40337 213 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 SNU13P55769 128 aaKnown RBP11.4□□□□□ -0.58
UPF1-205ENST00000598209 ZP1P60852 638 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 RPS11P62280 158 aaKnown RBP eCLIP11.4□□□□□ -0.58
UPF1-205ENST00000598209 SLC35A2P78381 396 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 Q499Y3 187 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 RUSC1-AS1Q66K80 236 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 BRD3OSQ6XYD6 125 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 SATL1Q86VE3 508 aa11.4□□□□□ -0.58
UPF1-205ENST00000598209 PHC2Q8IXK0 858 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms