RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 H7C417 338 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 SH2D1BO14796 132 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 PFDN1O60925 122 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 CA11O75493 328 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 GOSR1O95249 250 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 ZNF44P15621 663 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 GNB3P16520 340 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 AMY2BP19961 511 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 BCL3P20749 454 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 FUT3P21217 361 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 GLRA1P23415 457 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 MPZP25189 248 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 CD200P41217 278 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 OR3A3P47888 321 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 PTH2RP49190 550 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 SNU13P55769 128 aaKnown RBP5.28□□□□□ -1.56
LIG3-206ENST00000586058 NKX6-1P78426 367 aaPredicted RBP5.28□□□□□ -1.56
LIG3-206ENST00000586058 TNFAIP6P98066 277 aaPredicted RBP5.28□□□□□ -1.56
LIG3-206ENST00000586058 OXA1LQ15070 435 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 RBMS2Q15434 407 aaKnown RBP5.28□□□□□ -1.56
LIG3-206ENST00000586058 TESK1Q15569 626 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 CHRFAM7AQ494W8 412 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 NHLRC3Q5JS37 347 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 FAM209AQ5JX71 171 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 NCMAPQ5T1S8 102 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 ELP2Q6IA86 826 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 DCDC5Q6ZRR9 648 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 CALHM1Q8IU99 346 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 C1orf87Q8N0U7 546 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 FAM58AQ8N1B3 248 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 FBXL14Q8N1E6 418 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 SCCPDHQ8NBX0 429 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 TMEM104Q8NE00 496 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 OR5H2Q8NGV7 314 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 PPP1R35Q8TAP8 253 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 AQP3Q92482 292 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 TRIM63Q969Q1 353 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 ERGIC1Q969X5 290 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 PIK3IP1Q96FE7 263 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 WFIKKN1Q96NZ8 548 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 SDHCQ99643 169 aaPredicted RBP5.28□□□□□ -1.56
LIG3-206ENST00000586058 PRRT1Q99946 306 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 CMSS1Q9BQ75 279 aaKnown RBP5.28□□□□□ -1.56
LIG3-206ENST00000586058 SOSTQ9BQB4 213 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 PECRQ9BY49 303 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 MS4A5Q9H3V2 200 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 ZNF286AQ9HBT8 521 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 MSL2Q9HCI7 577 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 C12orf4Q9NQ89 552 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.28□□□□□ -1.56
LIG3-206ENST00000586058 DECR2Q9NUI1 292 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 MTFP1Q9UDX5 166 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 MGAT4AQ9UM21 535 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 EDARQ9UNE0 448 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 NUBP2Q9Y5Y2 271 aa5.28□□□□□ -1.56
LIG3-206ENST00000586058 ZFHX4Q86UP3 3567 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 KIR2DS1A0A191URI9 304 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.27□□□□□ -1.57
LIG3-206ENST00000586058 A0A1W2PP11 408 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 MEIS3P1A6NDR6 274 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 NKX6-3A6NJ46 265 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 B9A039 149 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 IFNL4K9M1U5 179 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 RAB27BO00194 218 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 MFNGO00587 321 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 CDIPTO14735 213 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 SOCS1O15524 211 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 MLNRO43193 412 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 SPRY3O43610 288 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 ZG16O60844 167 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 RAB3DO95716 219 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 MT-ND4P03905 459 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 AMY2AP04746 511 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 OR4A8P0C604 315 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 PGA5P0DJD9 388 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 IGF2RP11717 2491 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 APOBEC3AP31941 199 aaPredicted RBP5.27□□□□□ -1.57
LIG3-206ENST00000586058 ECI1P42126 302 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 GLP1RP43220 463 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 KIR2DS4P43632 304 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 UQCRFS1P47985 274 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 TSPAN5P62079 268 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 QRFPP83859 136 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 RELBQ01201 579 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 ZNF154Q13106 437 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 KIR2DS1Q14954 304 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 TAF9Q16594 264 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 ALKBH6Q3KRA9 238 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 PIGYQ3MUY2 71 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 MOGAT2Q3SYC2 334 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 ZNF260Q3ZCT1 412 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 PAN3Q58A45 887 aaKnown RBP5.27□□□□□ -1.57
LIG3-206ENST00000586058 OLFML2AQ68BL7 652 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 STEAP1BQ6NZ63 245 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 C11orf88Q6PI97 169 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 PCSK4Q6UW60 755 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 CCBE1Q6UXH8 406 aaPredicted RBP5.27□□□□□ -1.57
LIG3-206ENST00000586058 ASCL4Q6XD76 172 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 MOB1BQ7L9L4 216 aa5.27□□□□□ -1.57
LIG3-206ENST00000586058 NRARPQ7Z6K4 114 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms