RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	BPIFB3	P59826	476 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	HILS1	P60008	231 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	SLC35A2	P78381	396 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	BDH1	Q02338	343 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	ACSM1	Q08AH1	577 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	METTL11B	Q5VVY1	283 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	SAXO1	Q8IYX7	474 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	TMEM158	Q8WZ71	300 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	GHSR	Q92847	366 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	SLAMF9	Q96A28	289 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	TBX15	Q96SF7	602 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	SUCNR1	Q9BXA5	334 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	DUSP21	Q9H596	190 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	OCEL1	Q9H607	264 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	RHOF	Q9HBH0	211 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	SCN3B	Q9NY72	215 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	ZNF69	Q9UC07	566 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	PCDHGB5	Q9Y5G0	923 aa		13.4	□□□□□ -0.26
ERBB2-222	ENST00000584908	TRBV23-1	A0A0A0MS06	115 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	TRAV40	A0A0B4J280	105 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	MYL12B	O14950	172 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	TOX4	O94842	621 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	CYB5A	P00167	134 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	RPS11	P62280	158 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	DOC2B	Q14184	412 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	YIF1B	Q5BJH7	314 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	C1orf122	Q6ZSJ8	110 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	RNF144B	Q7Z419	303 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	MYDGF	Q969H8	173 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	TMEM106A	Q96A25	262 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	SLC6A7	Q99884	636 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	FAM234A	Q9H0X4	552 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	ERGIC3	Q9Y282	383 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	IGKV1-12	A0A0C4DH73	117 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	SPRY1	O43609	319 aa	Predicted RBP	13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	ZNF737	O75373	536 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	GPX5	O75715	221 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	KDM4B	O94953	1096 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	IGKV1D-12	P01611	117 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	SFTPB	P07988	381 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	OCM2	P0CE71	109 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	OCM	P0CE72	109 aa	Predicted RBP	13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	NDUFB7	P17568	137 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	RAB3A	P20336	220 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	NPBWR2	P48146	333 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	SOX2	P48431	317 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	POU3F4	P49335	361 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	ZP1	P60852	638 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	ARF6	P62330	175 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	IRF3	Q14653	427 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	ZNF146	Q15072	292 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	PDCD1	Q15116	288 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	KISS1	Q15726	138 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	KRTAP24-1	Q3LI83	254 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	METAP1D	Q6UB28	335 aa	Predicted RBP	13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	FAM58A	Q8N1B3	248 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	BATF2	Q8N1L9	274 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	BPIFB2	Q8N4F0	458 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	TMEM185A	Q8NFB2	350 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	ZFAND2B	Q8WV99	257 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	SPACA5	Q96QH8	159 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	PCGF1	Q9BSM1	259 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	UNKL	Q9H9P5	680 aa	Known RBP	13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	RAB26	Q9ULW5	256 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	TPRKB	Q9Y3C4	175 aa		13.39	□□□□□ -0.27
ERBB2-222	ENST00000584908	PTGES3L	E9PB15	166 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908		K7N7A8	449 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	VENTX	O95231	258 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	TK1	P04183	234 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	ALDOB	P05062	364 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	CHRM2	P08172	466 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	BCL3	P20749	454 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	VHL	P40337	213 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	CEBPD	P49716	269 aa	Predicted RBP	13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908		Q499Y3	187 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	SPIN3	Q5JUX0	258 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	ZFP41	Q8N8Y5	198 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	OR51A2	Q8NGJ7	313 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	H1FX	Q92522	213 aa	Known RBP	13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	EMG1	Q92979	244 aa	Known RBP	13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	CPNE2	Q96FN4	548 aa	Predicted RBP	13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	JMJD8	Q96S16	334 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	MND1	Q9BWT6	205 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	PRDM13	Q9H4Q3	707 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	HMG20A	Q9NP66	347 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	RBFOX1	Q9NWB1	397 aa	Known RBP	13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	OR14J1	Q9UGF5	321 aa		13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	LSM2	Q9Y333	95 aa	Known RBP	13.38	□□□□□ -0.27
ERBB2-222	ENST00000584908	CENPVL3	A0A0U1RRI6	287 aa		13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908	RNF212B	A8MTL3	300 aa		13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908		M0R1W7	72 aa		13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908	HCK	P08631	526 aa		13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908	IGFBP3	P17936	291 aa	Predicted RBP	13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908	FST	P19883	344 aa		13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908	CRHBP	P24387	322 aa		13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908	GPR157	Q5UAW9	335 aa		13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908	FIP1L1	Q6UN15	594 aa	Known RBP	13.37	□□□□□ -0.27
ERBB2-222	ENST00000584908	CMTM4	Q8IZR5	234 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms