RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PYDC1Q8WXC3 89 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 R3HDM4Q96D70 268 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 OR4F4Q96R69 305 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 CITED2Q99967 270 aaPredicted RBP16.98■□□□□ 0.31
VPS53-216ENST00000574029 APOL4Q9BPW4 351 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 PRSS22Q9GZN4 317 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 GABARAPL1Q9H0R8 117 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 NECAP2Q9NVZ3 263 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 PITPNC1Q9UKF7 332 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 OR52A1Q9UKL2 312 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.98■□□□□ 0.31
VPS53-216ENST00000574029 GTF2A1LQ9UNN4 478 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 SLC22A13Q9Y226 551 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 R4GMQ9 66 aa16.98■□□□□ 0.31
VPS53-216ENST00000574029 PRKYO43930 277 aa16.97■□□□□ 0.31
VPS53-216ENST00000574029 ZNF737O75373 536 aa16.97■□□□□ 0.31
VPS53-216ENST00000574029 LOXL3P58215 753 aa16.97■□□□□ 0.31
VPS53-216ENST00000574029 CXCR4P61073 352 aa16.97■□□□□ 0.31
VPS53-216ENST00000574029 ANGPTL5Q86XS5 388 aa16.97■□□□□ 0.31
VPS53-216ENST00000574029 MNTQ99583 582 aa16.97■□□□□ 0.31
VPS53-216ENST00000574029 PAPOLBQ9NRJ5 636 aaKnown RBP16.97■□□□□ 0.31
VPS53-216ENST00000574029 A6NIN4 97 aa16.96■□□□□ 0.31
VPS53-216ENST00000574029 H3BNX3 289 aa16.96■□□□□ 0.31
VPS53-216ENST00000574029 MAGEB4O15481 346 aaPredicted RBP16.96■□□□□ 0.31
VPS53-216ENST00000574029 CHRM2P08172 466 aa16.96■□□□□ 0.31
VPS53-216ENST00000574029 IGHV1-8P0DP01 117 aa16.96■□□□□ 0.31
VPS53-216ENST00000574029 KDM4DQ6B0I6 523 aa16.96■□□□□ 0.31
VPS53-216ENST00000574029 Q6ZS46 218 aa16.96■□□□□ 0.31
VPS53-216ENST00000574029 MEPCEQ7L2J0 689 aaKnown RBP16.96■□□□□ 0.31
VPS53-216ENST00000574029 ASCC1Q8N9N2 400 aaKnown RBP16.96■□□□□ 0.31
VPS53-216ENST00000574029 SNX5Q9Y5X3 404 aa16.96■□□□□ 0.31
VPS53-216ENST00000574029 CCL1P22362 96 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 PTGES3Q15185 160 aaKnown RBP16.95■□□□□ 0.3
VPS53-216ENST00000574029 PLEKHG7Q6ZR37 379 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 GDPD3Q7L5L3 318 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 TCF23Q7RTU1 214 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 BCDIN3DQ7Z5W3 292 aaKnown RBP16.95■□□□□ 0.3
VPS53-216ENST00000574029 SLC35F2Q8IXU6 374 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 SGCDQ92629 289 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 PHF21AQ96BD5 680 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 OSBPL10Q9BXB5 764 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 ADGRL4Q9HBW9 690 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 AURKAIP1Q9NWT8 199 aaPredicted RBP16.95■□□□□ 0.3
VPS53-216ENST00000574029 MTCH1Q9NZJ7 389 aa16.95■□□□□ 0.3
VPS53-216ENST00000574029 MRM2Q9UI43 246 aaKnown RBP16.95■□□□□ 0.3
VPS53-216ENST00000574029 MEX3AA1L020 520 aaKnown RBP16.94■□□□□ 0.3
VPS53-216ENST00000574029 F8VVB4 439 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 F8VWA3 439 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 PEX14O75381 377 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 EDDM3BP56851 147 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 BLCAPP62952 87 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 EFNB1P98172 346 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 MEF2CQ06413 473 aaPredicted RBP16.94■□□□□ 0.3
VPS53-216ENST00000574029 OR8H2Q8N162 312 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 TRMT10AQ8TBZ6 339 aaKnown RBP16.94■□□□□ 0.3
VPS53-216ENST00000574029 ZNF714Q96N38 554 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 KRT84Q9NSB2 600 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 CLN6Q9NWW5 311 aa16.94■□□□□ 0.3
VPS53-216ENST00000574029 FAM230AA0A1W2PPH8 454 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 ZNF670-ZNF695F2Z2N8 137 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 OR12D2P58182 307 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 DYNC1I2Q13409 638 aaKnown RBP16.93■□□□□ 0.3
VPS53-216ENST00000574029 MINOS1Q5TGZ0 78 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 AADACL4Q5VUY2 407 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 NXNL2Q5VZ03 156 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 SNX22Q96L94 193 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 CEP19Q96LK0 163 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 OR5M11Q96RB7 305 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 PRRG3Q9BZD7 231 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 OAZ3Q9UMX2 235 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 SLC7A11Q9UPY5 501 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 MINOS1-NBL1R4GNA1 71 aa16.93■□□□□ 0.3
VPS53-216ENST00000574029 IGKV1-27A0A075B6S5 117 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 TMEM82A0PJX8 343 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 JUNBP17275 347 aaPredicted RBP16.92■□□□□ 0.3
VPS53-216ENST00000574029 ACTA2P62736 377 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 ACTG2P63267 376 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 ACTC1P68032 377 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 ACTA1P68133 377 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 UBE2V2Q15819 145 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 WFDC9Q8NEX5 89 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 OCSTAMPQ9BR26 566 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 SEBOXQ9HB31 216 aaPredicted RBP16.92■□□□□ 0.3
VPS53-216ENST00000574029 S100A14Q9HCY8 104 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 H2AFY2Q9P0M6 372 aaPredicted RBP16.92■□□□□ 0.3
VPS53-216ENST00000574029 ENOPH1Q9UHY7 261 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 HILPDAQ9Y5L2 63 aa16.92■□□□□ 0.3
VPS53-216ENST00000574029 hADV38S2A0JD32 116 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 FAM90A22PA8MWA6 464 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 M0R129 80 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 F2RL2O00254 374 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 MITFO75030 526 aaPredicted RBP16.91■□□□□ 0.3
VPS53-216ENST00000574029 ALDOBP05062 364 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 VDAC2P45880 294 aaPredicted RBP16.91■□□□□ 0.3
VPS53-216ENST00000574029 CD83Q01151 205 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 TMEM95Q3KNT9 176 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 ARSJQ5FYB0 599 aaPredicted RBP16.91■□□□□ 0.3
VPS53-216ENST00000574029 FOXB2Q5VYV0 432 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 TCEANCQ8N8B7 351 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 TMEM163Q8TC26 289 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms