RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 KIAA1549Q9HCM3 1950 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 hCG_2014768A0A024R1R8 64 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 IGHV2OR16-5A0A0B4J2B6 119 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 A0A1B0GVG6 124 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 A0A1B0GWJ7 208 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 PLSCR5A0PG75 271 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 HMX3A6NHT5 357 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 MFNGO00587 321 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 LANCL1O43813 399 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 TIMM8AO60220 97 aaPredicted RBP6.82□□□□□ -1.32
VPS39-213ENST00000570062 NOS1APO75052 506 aaPredicted RBP6.82□□□□□ -1.32
VPS39-213ENST00000570062 PDCD6O75340 191 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 NDUFB6O95139 128 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 RAB3DO95716 219 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 IGHV3-13P01766 116 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 ZNF250P15622 560 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 TNFSF4P23510 183 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 GIFP27352 417 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 MECP2P51608 486 aaKnown RBP6.82□□□□□ -1.32
VPS39-213ENST00000570062 SORDQ00796 357 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 PSG7Q13046 419 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 HLXQ14774 488 aaPredicted RBP6.82□□□□□ -1.32
VPS39-213ENST00000570062 GRK1Q15835 563 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 METTL11BQ5VVY1 283 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 OR2T2Q6IF00 324 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 OR10K2Q6IF99 312 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 SLC25A26Q70HW3 274 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 FJX1Q86VR8 437 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 HOGA1Q86XE5 327 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 DTX3Q8N9I9 347 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 TMEM104Q8NE00 496 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 OR5D18Q8NGL1 313 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 RNASE6Q93091 150 aaKnown RBP6.82□□□□□ -1.32
VPS39-213ENST00000570062 ERGIC1Q969X5 290 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 ADAT1Q9BUB4 502 aaKnown RBP6.82□□□□□ -1.32
VPS39-213ENST00000570062 OR51I2Q9H344 312 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 BANF2Q9H503 90 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 ESRP2Q9H6T0 727 aaKnown RBP6.82□□□□□ -1.32
VPS39-213ENST00000570062 IFT22Q9H7X7 185 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 SEBOXQ9HB31 216 aaPredicted RBP6.82□□□□□ -1.32
VPS39-213ENST00000570062 MCUBQ9NWR8 336 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 RASL12Q9NYN1 266 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 TINAGQ9UJW2 476 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 ZDHHC8Q9ULC8 765 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 ANAPC10Q9UM13 185 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 MGAT4AQ9UM21 535 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 ST3GAL6Q9Y274 331 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 FREM2Q5SZK8 3169 aa6.82□□□□□ -1.32
VPS39-213ENST00000570062 FOXI3A8MTJ6 420 aaPredicted RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 SNRPGP15A8MWD9 76 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 MCRIP1C9JLW8 97 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 M0R1B8 84 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 CCL21O00585 134 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 SOCS1O15524 211 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 PEX14O75381 377 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 AGFG2O95081 481 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 IL5P05113 134 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 FCER2P06734 321 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 HNRNPCP07910 306 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS39-213ENST00000570062 CTXN2P0C2S0 81 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 GNB3P16520 340 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 AGAP20933 346 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 CA6P23280 308 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 CD40P25942 277 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 MDH2P40926 338 aaKnown RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 OR3A3P47888 321 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 KCNJ3P48549 501 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 SRP9P49458 86 aaKnown RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 ZNF83P51522 516 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 GPM6AP51674 278 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 TMEM50BP56557 158 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 RBM11P57052 281 aaKnown RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 KLF3P57682 345 aaPredicted RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 FAM27E3Q08E93 113 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 MADCAM1Q13477 382 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 SPIN3Q5JUX0 258 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 VAX1Q5SQQ9 334 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 C1QL2Q7Z5L3 287 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 AKAP14Q86UN6 197 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 FAM90A1Q86YD7 464 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 FBXL14Q8N1E6 418 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 OR4K15Q8NH41 348 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 LILRB4Q8NHJ6 448 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 HPSE2Q8WWQ2 592 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 ASB13Q8WXK3 278 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 ST8SIA4Q92187 359 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 SNAPC3Q92966 411 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 ARHGAP5-AS1Q96IT6 56 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 MEGF10Q96KG7 1140 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 BBC3Q96PG8 261 aaPredicted RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 DHRS9Q9BPW9 319 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 PECRQ9BY49 303 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 ZNF442Q9H7R0 627 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 MYOZ1Q9NP98 299 aaPredicted RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 ING3Q9NXR8 418 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 TREM2Q9NZC2 230 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 MYEF2Q9P2K5 600 aaKnown RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 URB1O60287 2271 aaKnown RBP6.81□□□□□ -1.32
VPS39-213ENST00000570062 MED12Q93074 2177 aa6.81□□□□□ -1.32
VPS39-213ENST00000570062 IGKV1-27A0A075B6S5 117 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms