RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 IGHV2-5P01817 119 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 WNT2P09544 360 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 PPIAL4FP0DN26 164 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 CALCBP10092 127 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 PSG2P11465 335 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 SLC25A16P16260 332 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 SDC2P34741 201 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 MDH2P40926 338 aaKnown RBP7.74□□□□□ -1.17
VPS35-211ENST00000569950 MTNR1BP49286 362 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 CEBPDP49716 269 aaPredicted RBP7.74□□□□□ -1.17
VPS35-211ENST00000569950 PAX2Q02962 417 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 LOXL1Q08397 574 aaPredicted RBP7.74□□□□□ -1.17
VPS35-211ENST00000569950 UNC119Q13432 240 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 BLMHQ13867 455 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 CARTPTQ16568 116 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 TMEM155Q4W5P6 130 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 GPR107Q5VW38 600 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 Q6P435 159 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 ZNF788Q6ZQV5 615 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 NKAIN3Q8N8D7 197 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 DEFB108BQ8NET1 73 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 OR5T2Q8NGG2 359 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 OR51T1Q8NGJ9 327 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 OR11L1Q8NGX0 322 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 OR10K1Q8NGX5 313 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 TNFAIP8L1Q8WVP5 186 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 HPS1Q92902 700 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 COX4I2Q96KJ9 171 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 CEP19Q96LK0 163 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 GAFA1Q96PS6 74 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 UQCC2Q9BRT2 126 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 TMUB1Q9BVT8 246 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 SMURF1Q9HCE7 757 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 VCX3AQ9NNX9 186 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 HMG20AQ9NP66 347 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 EXOSC4Q9NPD3 245 aaKnown RBP7.74□□□□□ -1.17
VPS35-211ENST00000569950 IL36GQ9NZH8 169 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 ITGB1BP2Q9UKP3 347 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 PPIAL4AQ9Y536 164 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 MAB21L2Q9Y586 359 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 NF1P21359 2839 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 A0A0A6YYD4 124 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 MEGF11A6BM72 1044 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 LRRC30A6NM36 301 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 IFITM5A6NNB3 132 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 FOXI3A8MTJ6 420 aaPredicted RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 TMEM14DPA8MWL7 114 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 ZNF737O75373 536 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 VSIG8P0DPA2 414 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 SLC2A2P11168 524 aaPredicted RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 MUC1P15941 1255 aaPredicted RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 GLRA1P23415 457 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 ZFP36P26651 326 aaKnown RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 RPS19P39019 145 aaKnown RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 CLDN12P56749 244 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 GMFBP60983 142 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 VBP1P61758 197 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 LSM3P62310 102 aaKnown RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 DGUOKQ16854 277 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 NHLRC3Q5JS37 347 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 FOXB2Q5VYV0 432 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 SIGIRRQ6IA17 410 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 OR10K2Q6IF99 312 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 RTN4RL2Q86UN3 420 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 FAM216BQ8N7L0 139 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 BOLLQ8N9W6 283 aaKnown RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 ZNF671Q8TAW3 534 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 NDNFQ8TB73 568 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 TBC1D15Q8TC07 691 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 C12orf43Q96C57 262 aaKnown RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 SDSLQ96GA7 329 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 KCTD7Q96MP8 289 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 PIMREGQ9BSJ6 248 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 BARHL1Q9BZE3 327 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 NARFLQ9H6Q4 476 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 SEBOXQ9HB31 216 aaPredicted RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 PATZ1Q9HBE1 687 aaKnown RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 TCF7L1Q9HCS4 588 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 NLKQ9UBE8 527 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 KAAG1Q9UBP8 84 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 CKLFQ9UBR5 152 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 SCOCQ9UIL1 159 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 SSR3Q9UNL2 185 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 MRPS28Q9Y2Q9 187 aaKnown RBP7.73□□□□□ -1.17
VPS35-211ENST00000569950 POLDIP2Q9Y2S7 368 aa7.73□□□□□ -1.17
VPS35-211ENST00000569950 TMEM82A0PJX8 343 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 OR2AT4A6NND4 320 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 A8MXK9 166 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 H7C1Q1 480 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 GYPAP02724 150 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 TMEM225BP0DP42 221 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 RAB3BP20337 219 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 USF1P22415 310 aaPredicted RBP7.72□□□□□ -1.17
VPS35-211ENST00000569950 DUSP1P28562 367 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 FGF12P61328 243 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 SPCS2Q15005 226 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 ZNF146Q15072 292 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 P2RY14Q15391 338 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 PIGYQ3MUY2 71 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 METAP1DQ6UB28 335 aaPredicted RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms