RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 E7EWF7 191 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 RNASEK-C17orf49H0YIS7 233 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 MKRN2OSH3BPM6 223 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 SMLR1H3BR10 107 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 COCHO43405 550 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 XRCC2O43543 280 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 ZMPSTE24O75844 475 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 SC5DO75845 299 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 FARS2O95363 451 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 AHSA1O95433 338 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 FADS2O95864 444 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 TRBV12-3P01733 135 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 HLA-HP01893 362 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 HBE1P02100 147 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 KRT16P08779 473 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 HSPD1P10809 573 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 NELFEP18615 380 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 PMCHP20382 165 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 BGNP21810 368 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 IVDP26440 423 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 HTR2CP28335 458 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 GABRR2P28476 465 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 PPICP45877 212 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 FABP6P51161 128 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 UBE2G2P60604 165 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 RPS15AP62244 130 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 TPBGQ13641 420 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 RPEL1Q2QD12 228 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 ZNF678Q5SXM1 525 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 MFSD14CQ5VZR4 134 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 TMEM236Q5W0B7 351 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 FAM173BQ6P4H8 233 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 TMPRSS11AQ6ZMR5 421 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 SLC35D2Q76EJ3 337 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 PAGE2Q7Z2X7 111 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 DCXRQ7Z4W1 244 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 SYS1Q8N2H4 156 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 JAGN1Q8N5M9 183 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 TRAM1L1Q8N609 369 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 CDRT4Q8N9R6 151 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 TTC29Q8NA56 475 aaPredicted RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 LY6G5BQ8NDX9 201 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 OR6N2Q8NGY6 317 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 CDC26Q8NHZ8 85 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 UBA3Q8TBC4 463 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 TMEM239Q8WW34 195 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 ING5Q8WYH8 240 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 TFGQ92734 400 aaPredicted RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 ISOC2Q96AB3 205 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 APH1AQ96BI3 265 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 CCDC127Q96BQ5 260 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 FXYD5Q96DB9 178 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 CHMP6Q96FZ7 201 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 RNF170Q96K19 258 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 SERPINB11Q96P15 392 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 C7orf50Q9BRJ6 194 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 MED10Q9BTT4 135 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 SPZ1Q9BXG8 430 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 MS4A8Q9BY19 250 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 PARD6GQ9BYG4 376 aaPredicted RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 ZYG11BQ9C0D3 744 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 NAA50Q9GZZ1 169 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 DRC3Q9H069 523 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 DEFB129Q9H1M3 183 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 SYT4Q9H2B2 425 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 PIGUQ9H490 435 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 KIR3DX1Q9H7L2 352 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 SND1-IT1Q9HBX3 110 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 ANKHQ9HCJ1 492 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 OR2S2Q9NQN1 319 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 IMP3Q9NV31 184 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 CLEC2DQ9UHP7 191 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 NAGKQ9UJ70 344 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 NXT1Q9UKK6 140 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 RCL1Q9Y2P8 373 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 URGCP-MRPS24S4R325 110 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 NUP205Q92621 2012 aa0.92□□□□□ -2.26
VPS35-207ENST00000568191 LRPPRCP42704 1394 aaKnown RBP0.92□□□□□ -2.26
VPS35-207ENST00000568191 LOC102724200A0A096LPH7 203 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 A0A0A6YYH2 397 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 A0A1W2PRF3 423 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 A0A1W2PRM7 423 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TSPAN11A1L157 253 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TMEM213A2RRL7 107 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 FABP12A6NFH5 140 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 A6NJ64 397 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 SLC22A20A6NK97 555 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TMEM210A6NLX4 147 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 F8VP50 259 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 KLRC4-KLRK1H3BQV0 150 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TAAR5O14804 337 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 LIN7AO14910 233 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 TOX3O15405 576 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 AQP9O43315 295 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TRAPPC3O43617 180 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 SULT1B1O43704 296 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 SLC16A7O60669 478 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 HSBP1O75506 76 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 ATP5HO75947 161 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 OR5F1O95221 314 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms