RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 A0A0X1KG70 313 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 A8MXK9 166 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 NDUFB3O43676 98 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 ACAA1P09110 424 aaPredicted RBP14.34□□□□□ -0.11
CLN3-217ENST00000565354 CPEP16870 476 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 FSTP19883 344 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 PSMA1P25786 263 aaKnown RBP14.34□□□□□ -0.11
CLN3-217ENST00000565354 PSMB9P28065 219 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 COMPP49747 757 aaPredicted RBP14.34□□□□□ -0.11
CLN3-217ENST00000565354 PDZK1IP1Q13113 114 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 IKZF1Q13422 519 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 TPBGQ13641 420 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 LRRC10Q5BKY1 277 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 ARMCX4Q5H9R4 360 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 WDR25Q64LD2 544 aaPredicted RBP14.34□□□□□ -0.11
CLN3-217ENST00000565354 FAHD2BQ6P2I3 314 aaPredicted RBP14.34□□□□□ -0.11
CLN3-217ENST00000565354 ZNF773Q6PK81 442 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 FAM216BQ8N7L0 139 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 OR4M2Q8NGB6 313 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 ST8SIA4Q92187 359 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 FCGR1BQ92637 280 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 TMEM203Q969S6 136 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 FAHD2AQ96GK7 314 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 MED30Q96HR3 178 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 S100A13Q99584 98 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 NRIP2Q9BQI9 281 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 OCEL1Q9H607 264 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 ELL3Q9HB65 397 aaPredicted RBP14.34□□□□□ -0.11
CLN3-217ENST00000565354 NOX4Q9NPH5 578 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 MTCH1Q9NZJ7 389 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 KAAG1Q9UBP8 84 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 CTSZQ9UBR2 303 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 METRNQ9UJH8 293 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 FOXJ3Q9UPW0 622 aa14.34□□□□□ -0.11
CLN3-217ENST00000565354 TRBV5-7A0A0A0MS05 114 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 RFPL4AA6NLU0 287 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 RFPL4AL1F8VTS6 287 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 DVL1O14640 695 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 ANGPTL7O43827 346 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 TNFAIP8O95379 198 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 MAS1P04201 325 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 ALDOBP05062 364 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 PSG2P11465 335 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 BCL3P20749 454 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 ZFP36P26651 326 aaKnown RBP14.33□□□□□ -0.12
CLN3-217ENST00000565354 ZNF93P35789 620 aaPredicted RBP14.33□□□□□ -0.12
CLN3-217ENST00000565354 CAPZA1P52907 286 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 RPS25P62851 125 aaKnown RBP14.33□□□□□ -0.12
CLN3-217ENST00000565354 IL13RA1P78552 427 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 ZNF529Q6P280 563 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 BTNL3Q6UXE8 466 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 CEACAM19Q7Z692 300 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 C3orf56Q8N813 242 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 OR52N4Q8NGI2 321 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 ANGPTL6Q8NI99 470 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 TNFAIP8L1Q8WVP5 186 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 TCF7L1Q9HCS4 588 aa14.33□□□□□ -0.12
CLN3-217ENST00000565354 LOC105371242A0A075B767 164 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 TNFRSF13BO14836 293 aaPredicted RBP14.32□□□□□ -0.12
CLN3-217ENST00000565354 RGS9O75916 674 aaPredicted RBP14.32□□□□□ -0.12
CLN3-217ENST00000565354 KNG1P01042 644 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 TFF1P04155 84 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 PRKACAP17612 351 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 IGFBP3P17936 291 aaPredicted RBP14.32□□□□□ -0.12
CLN3-217ENST00000565354 GATA3P23771 443 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 SNU13P55769 128 aaKnown RBP14.32□□□□□ -0.12
CLN3-217ENST00000565354 ACTG1P63261 375 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 HSD17B12Q53GQ0 312 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 ATPAF1Q5TC12 328 aaPredicted RBP14.32□□□□□ -0.12
CLN3-217ENST00000565354 CD276Q5ZPR3 534 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 ASPHD2Q6ICH7 369 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 ZNF788Q6ZQV5 615 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 SAXO1Q8IYX7 474 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 FAM58AQ8N1B3 248 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 ZSCAN4Q8NAM6 433 aaPredicted RBP14.32□□□□□ -0.12
CLN3-217ENST00000565354 TMEM185AQ8NFB2 350 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 SLITRK2Q9H156 845 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 HES4Q9HCC6 221 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 GLS2Q9UI32 602 aa14.32□□□□□ -0.12
CLN3-217ENST00000565354 TRAV8-7A0A075B6U6 113 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 GABRPO00591 440 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 SIGLEC5O15389 551 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 GPX5O75715 221 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 NDUFB7P17568 137 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 GABRA5P31644 462 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 PRDX2P32119 198 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 NPBWR2P48146 333 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 ERVK11-1P61568 191 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 INSL4Q14641 139 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 UBE2UQ5VVX9 321 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 ZNF841Q6ZN19 808 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 RNF144BQ7Z419 303 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 JAGN1Q8N5M9 183 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 H1FXQ92522 213 aaKnown RBP14.31□□□□□ -0.12
CLN3-217ENST00000565354 GAFA1Q96PS6 74 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 MRI1Q9BV20 369 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 VCX3AQ9NNX9 186 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 RBFOX1Q9NWB1 397 aaKnown RBP14.31□□□□□ -0.12
CLN3-217ENST00000565354 SLC25A10Q9UBX3 287 aaPredicted RBP14.31□□□□□ -0.12
CLN3-217ENST00000565354 ING4Q9UNL4 249 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms