RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PLATP00750 562 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 CRYAAP02489 173 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 CECR9P0C854 216 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 TRAPPC2P0DI81 140 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 TRAPPC2BP0DI82 140 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 GNB3P16520 340 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 TBPP20226 339 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 HAAOP46952 286 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 GPM6AP51674 278 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 CCR6P51684 374 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 PRSS12P56730 875 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 RAB25P57735 213 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 MRPS15P82914 257 aaKnown RBP7.64□□□□□ -1.19
VPS39-207ENST00000563692 TATDN3Q17R31 274 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 SPATA46Q5T0L3 261 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 CRIP3Q6Q6R5 217 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 SPNS3Q6ZMD2 512 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 SLC25A26Q70HW3 274 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 ZNF611Q8N823 705 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 SPERTQ8NA61 448 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 OR10K1Q8NGX5 313 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 NRGNQ92686 78 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 HPS1Q92902 700 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 S100PBPQ96BU1 408 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 ARHGAP5-AS1Q96IT6 56 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 NEURL2Q9BR09 285 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 NICN1Q9BSH3 213 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 RTL8AQ9BWD3 113 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 OR10A4Q9H209 315 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 POFUT1Q9H488 388 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 PLK3Q9H4B4 646 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 RHOFQ9HBH0 211 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 PLEKHJ1Q9NW61 149 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 SCP2D1Q9UJQ7 156 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 HSF4Q9ULV5 492 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 PLEKHA6Q9Y2H5 1048 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 F8P00451 2351 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 ANKRD17O75179 2603 aaKnown RBP7.63□□□□□ -1.19
VPS39-207ENST00000563692 TRAV6A0A075B6T7 132 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 IGHV1-18A0A0C4DH31 117 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 A0A1W2PP11 408 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 MEIS3P1A6NDR6 274 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A10PA6NDY2 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A18PA6NE21 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A16PA6NEW6 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A20PA6NIJ5 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A8PA6NJQ4 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A7PA6NKC0 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A22PA8MWA6 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A12PA8MX19 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A5PA8MXJ8 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A23PA8MXZ1 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 IQCF6A8MYZ5 107 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 M0R1B8 84 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 PRAF2O60831 178 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 CCNKO75909 580 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 CD3DP04234 171 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 IFNA6P05013 189 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A15PP0C7V4 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A13PP0C7W8 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A14PP0C7W9 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FAM90A24PP0C7X0 464 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 CA6P23280 308 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 GABRR1P24046 479 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 BTCP35070 178 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 PMELP40967 661 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 ZNF83P51522 516 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 TMEM50BP56557 158 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 PSG7Q13046 419 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 OR8G1Q15617 311 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 ACTBL2Q562R1 376 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 PLAC9Q5JTB6 97 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 ELP2Q6IA86 826 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 BHLHE23Q8NDY6 225 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 Q8NFD4 153 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 KLF14Q8TD94 323 aaPredicted RBP7.63□□□□□ -1.19
VPS39-207ENST00000563692 UPRTQ96BW1 309 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 MARS2Q96GW9 593 aaKnown RBP7.63□□□□□ -1.19
VPS39-207ENST00000563692 Q96M66 194 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 FOXC2Q99958 501 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 SLC25A21Q9BQT8 299 aaPredicted RBP7.63□□□□□ -1.19
VPS39-207ENST00000563692 OCSTAMPQ9BR26 566 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 PECRQ9BY49 303 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 PKIBQ9C010 78 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 NUDT15Q9NV35 164 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 ST3GAL6Q9Y274 331 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 AKAP6Q13023 2319 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 DOCK7Q96N67 2140 aa7.63□□□□□ -1.19
VPS39-207ENST00000563692 A0A0A6YYD4 124 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 IGHV2OR16-5A0A0B4J2B6 119 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 FAM221AA4D161 298 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 TMEM210A6NLX4 147 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 FOXI3A8MTJ6 420 aaPredicted RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 VSTM5A8MXK1 200 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 MFNGO00587 321 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 TIMM8AO60220 97 aaPredicted RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 NDUFB6O95139 128 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 CD74P04233 296 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 PPP3CBP16298 524 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 KITLGP21583 273 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms