RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 OR4C13Q8NGP0 309 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 CFHR4Q92496 578 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 PKIBQ9C010 78 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 MTCH1Q9NZJ7 389 aa15.38■□□□□ 0.05
VPS35-202ENST00000561713 WARS2Q9UGM6 360 aaKnown RBP15.38■□□□□ 0.05
VPS35-202ENST00000561713 METTL15A6NJ78 407 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 SNU13P55769 128 aaKnown RBP15.37■□□□□ 0.05
VPS35-202ENST00000561713 IL24Q13007 206 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 CRIP3Q6Q6R5 217 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 SLC25A26Q70HW3 274 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 RDH10Q8IZV5 341 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 KLHDC1Q8N7A1 406 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 TPRX1Q8N7U7 411 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 MRAPQ8TCY5 172 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 ITFG2Q969R8 447 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 EME1Q96AY2 570 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 CEP19Q96LK0 163 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 GABARAPL3Q9BY60 117 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 CHST5Q9GZS9 411 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 GNG8Q9UK08 70 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.37■□□□□ 0.05
VPS35-202ENST00000561713 SLC7A11Q9UPY5 501 aa15.37■□□□□ 0.05
VPS35-202ENST00000561713 NOTCH3Q9UM47 2321 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 A0A1W2PPH5 198 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 DHRS7CA6NNS2 312 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 ZNF737O75373 536 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 CALCBP10092 127 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 JUNBP17275 347 aaPredicted RBP15.36■□□□□ 0.05
VPS35-202ENST00000561713 POU3F4P49335 361 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 RAB13P51153 203 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 ZNF85Q03923 595 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 HABP2Q14520 560 aaPredicted RBP15.36■□□□□ 0.05
VPS35-202ENST00000561713 OXLD1Q5BKU9 147 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 LDLRAD2Q5SZI1 272 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 TMEM219Q86XT9 240 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 EMG1Q92979 244 aaKnown RBP15.36■□□□□ 0.05
VPS35-202ENST00000561713 HEXA-AS1Q9H8Q6 139 aa15.36■□□□□ 0.05
VPS35-202ENST00000561713 TMEM82A0PJX8 343 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 K7N7A8 449 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 IGHA1P01876 353 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 ARG1P05089 322 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 OR2T7P0C7T2 308 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 FCGR1AP12314 374 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 ATP6V1E1P36543 226 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 KIR2DS4P43632 304 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 LGALS4P56470 323 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 FAM220AQ7Z4H9 259 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 LYG1Q8N1E2 194 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 PIFOQ8TCI5 191 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 RNF166Q96A37 237 aaPredicted RBP15.35■□□□□ 0.05
VPS35-202ENST00000561713 CHST6Q9GZX3 395 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 FAM234AQ9H0X4 552 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 MEGF9Q9H1U4 602 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 RBFOX1Q9NWB1 397 aaKnown RBP15.35■□□□□ 0.05
VPS35-202ENST00000561713 ENOPH1Q9UHY7 261 aa15.35■□□□□ 0.05
VPS35-202ENST00000561713 GATBO75879 557 aaKnown RBP15.34■□□□□ 0.05
VPS35-202ENST00000561713 VSIG10L2P0DP72 767 aa15.34■□□□□ 0.05
VPS35-202ENST00000561713 DUSP1P28562 367 aa15.34■□□□□ 0.05
VPS35-202ENST00000561713 LOXL3P58215 753 aa15.34■□□□□ 0.05
VPS35-202ENST00000561713 GDPD3Q7L5L3 318 aa15.34■□□□□ 0.05
VPS35-202ENST00000561713 PYDC1Q8WXC3 89 aa15.34■□□□□ 0.05
VPS35-202ENST00000561713 RFT1Q96AA3 541 aa15.34■□□□□ 0.05
VPS35-202ENST00000561713 ADAT3Q96EY9 351 aaPredicted RBP15.34■□□□□ 0.05
VPS35-202ENST00000561713 BORCS8Q96FH0 119 aa15.34■□□□□ 0.05
VPS35-202ENST00000561713 COL7A1Q02388 2944 aa15.34■□□□□ 0.05
VPS35-202ENST00000561713 hCG_1809904A0A1W2PP81 198 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 A0A1W2PPE2 198 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 A0A1W2PR64 198 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 A0A1W2PRV1 198 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 C17orf98A8MV24 154 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 ODF3BA8MYP8 253 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 HAND1O96004 215 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 ZNF728P0DKX0 622 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 BCL3P20749 454 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 NPBWR2P48146 333 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 ISL1P61371 349 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 C11orf88Q6PI97 169 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 OR8H2Q8N162 312 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 OR8J1Q8NGP2 316 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 OR10AC1Q8NH08 325 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 OR2T6Q8NHC8 308 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 CENPNQ96H22 339 aaPredicted RBP15.33■□□□□ 0.04
VPS35-202ENST00000561713 ADI1Q9BV57 179 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 OSBPL10Q9BXB5 764 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 NPFFR1Q9GZQ6 430 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 ZNF702PQ9H963 129 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 AASSQ9UDR5 926 aa15.33■□□□□ 0.04
VPS35-202ENST00000561713 IGKV1-9A0A0C4DH69 117 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 SULT1C4O75897 302 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 UBCP0CG48 685 aaKnown RBP15.32■□□□□ 0.04
VPS35-202ENST00000561713 GABRR1P24046 479 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 DYNC1I2Q13409 638 aaKnown RBP15.32■□□□□ 0.04
VPS35-202ENST00000561713 CNN3Q15417 329 aaKnown RBP15.32■□□□□ 0.04
VPS35-202ENST00000561713 SSX2Q16385 188 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 CCBE1Q6UXH8 406 aaPredicted RBP15.32■□□□□ 0.04
VPS35-202ENST00000561713 RNF144BQ7Z419 303 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 EGFL6Q8IUX8 553 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 OR52N4Q8NGI2 321 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 SGCDQ92629 289 aa15.32■□□□□ 0.04
VPS35-202ENST00000561713 ZNF714Q96N38 554 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms