RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 OTX2P32243 289 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 RPL35P42766 123 aaKnown RBP11.18□□□□□ -0.62
LDLR-207ENST00000558013 NPBWR2P48146 333 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 ZNF133P52736 654 aaPredicted RBP11.18□□□□□ -0.62
LDLR-207ENST00000558013 CEACAM16Q2WEN9 425 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 SLC22A25Q6T423 547 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 GGNQ86UU5 652 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 OR52M1Q8NGK5 317 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 HS3ST6Q96QI5 342 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 PRRX2Q99811 253 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 NAA11Q9BSU3 229 aaPredicted RBP11.18□□□□□ -0.62
LDLR-207ENST00000558013 PRDM6Q9NQX0 595 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 DEPPQ9NTK1 212 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 CRIM1Q9NZV1 1036 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 RCC2Q9P258 522 aaKnown RBP11.18□□□□□ -0.62
LDLR-207ENST00000558013 H7C2Y5 167 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 DEDDO75618 318 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 CBR3O75828 277 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 VAMP5O95183 116 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 PRKACAP17612 351 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 AKR1D1P51857 326 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 MLF1P58340 268 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 FAM189A2Q15884 450 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 C10orf91Q5T1B1 145 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 RTN4IP1Q8WWV3 396 aaPredicted RBP11.17□□□□□ -0.62
LDLR-207ENST00000558013 PIGCQ92535 297 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 BORCS8Q96FH0 119 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 WFDC1Q9HC57 220 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 TMEM38BQ9NVV0 291 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 MLXQ9UH92 298 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 PINLYPA6NC86 204 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 RNASEK-C17orf49H0YIS7 233 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 NRASP01111 189 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 CTSDP07339 412 aaPredicted RBP11.17□□□□□ -0.62
LDLR-207ENST00000558013 CHATP28329 748 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 RBP2P50120 134 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 CAV2P51636 162 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 IL11RAQ14626 422 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 DAZAP2Q15038 168 aaPredicted RBP11.17□□□□□ -0.62
LDLR-207ENST00000558013 LPAL2Q16609 132 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 TMEM268Q5VZI3 342 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 PMS2CLQ68D20 193 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 Q6ZRG5 221 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 SKA3Q8IX90 412 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 OR2Y1Q8NGV0 311 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 DNAJB11Q9UBS4 358 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 ST3GAL6Q9Y274 331 aa11.17□□□□□ -0.62
LDLR-207ENST00000558013 CARHSP1Q9Y2V2 147 aaKnown RBP11.17□□□□□ -0.62
LDLR-207ENST00000558013 ZNF716A6NP11 495 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 SLC33A1O00400 549 aaPredicted RBP11.16□□□□□ -0.62
LDLR-207ENST00000558013 DHRS11Q6UWP2 260 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 AAED1Q7RTV5 226 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 AKR1E2Q96JD6 320 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 NME2P1O60361 137 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 PET100P0DJ07 73 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 ZNF728P0DKX0 622 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 CCNOP22674 350 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 FKBP2P26885 142 aaKnown RBP11.16□□□□□ -0.62
LDLR-207ENST00000558013 RAC3P60763 192 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 RAB35Q15286 201 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 SURF2Q15527 256 aaPredicted RBP11.16□□□□□ -0.62
LDLR-207ENST00000558013 TGIF1Q15583 401 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 EXT1Q16394 746 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 IGSF11Q5DX21 431 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 OR10D3Q8NH80 312 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 SECTM1Q8WVN6 248 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 NAT6Q93015 286 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 WNT5BQ9H1J7 359 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 SH3BGRL3Q9H299 93 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 ZDHHC8Q9ULC8 765 aa11.16□□□□□ -0.62
LDLR-207ENST00000558013 MEX3AA1L020 520 aaKnown RBP11.15□□□□□ -0.62
LDLR-207ENST00000558013 C9J4A7 227 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 NDUFA2O43678 99 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 NR2C1P13056 603 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 FAM3AP98173 230 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 NHLH2Q02577 135 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 Q6ZSR3 168 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 GPR137CQ8N3F9 429 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 CPEB3Q8NE35 698 aaKnown RBP11.15□□□□□ -0.62
LDLR-207ENST00000558013 SLC2A9Q9NRM0 540 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 HSPB6O14558 160 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 H2AFB1P0C5Y9 115 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 KCNJ3P48549 501 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 FOXG1P55316 489 aaPredicted RBP11.15□□□□□ -0.62
LDLR-207ENST00000558013 PDZK1IP1Q13113 114 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 TMEM187Q14656 261 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 ABCA11PQ4W5N1 156 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 BTNL8Q6UX41 500 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 MEX3BQ6ZN04 569 aaKnown RBP11.15□□□□□ -0.62
LDLR-207ENST00000558013 LINC00518Q8N0U6 118 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 RXFP4Q8TDU9 374 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 GLYATL2Q8WU03 294 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 FOXB1Q99853 325 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 SEC11CQ9BY50 192 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 IL36RNQ9UBH0 155 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 MEMO1Q9Y316 297 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 LAMA5O15230 3695 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 DOCK10Q96BY6 2186 aa11.15□□□□□ -0.62
LDLR-207ENST00000558013 A0A096LPE4 126 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 A0A1W2PPZ6 126 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms