RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 EN2P19622 333 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-231ENST00000557433 RSPO1Q2MKA7 263 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-231ENST00000557433 LYZL2Q7Z4W2 148 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 ISOC2Q96AB3 205 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 YPEL4Q96NS1 127 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 RSRP1Q9BUV0 290 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 LAMA3Q16787 3333 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 A0A1W2PPE3 182 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 OR5H15A6NDH6 313 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 GATCO43716 136 aaKnown RBP14.16□□□□□ -0.14
SHMT2-231ENST00000557433 PITX3O75364 302 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 OR2J2O76002 312 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 MRPS34P82930 218 aaKnown RBP14.16□□□□□ -0.14
SHMT2-231ENST00000557433 RAB35Q15286 201 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 HIKESHIQ53FT3 197 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 FAM27BQ5VT28 67 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 TMEM123Q8N131 208 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 FAM24BQ8N5W8 94 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 DEFB119Q8N690 84 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 WDSUB1Q8N9V3 476 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 SGK3Q96BR1 496 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 BSCL2Q96G97 398 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-231ENST00000557433 BOD1Q96IK1 185 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 SLC25A31Q9H0C2 315 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 PARP12Q9H0J9 701 aaKnown RBP14.16□□□□□ -0.14
SHMT2-231ENST00000557433 HIPK2Q9H2X6 1198 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 LIME1Q9H400 295 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 PLSCR2Q9NRY7 297 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 PLEK2Q9NYT0 353 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 RCL1Q9Y2P8 373 aaKnown RBP14.16□□□□□ -0.14
SHMT2-231ENST00000557433 FER1L5A0AVI2 2057 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 TRANK1O15050 2925 aa14.16□□□□□ -0.14
SHMT2-231ENST00000557433 hCG_1809904A0A1W2PP81 198 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 A0A1W2PR64 198 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 A0A1W2PRV1 198 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 C2CD4DB7Z1M9 353 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 NPIPA2E9PIF3 369 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 NPIPA3F8WFD2 350 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 WRBO00258 174 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 MSTNO14793 375 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 HSPA12AO43301 675 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 OR2C1O95371 312 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 DIRAS3O95661 229 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 OPN1LWP04000 364 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 MMP9P14780 707 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 RBP2P50120 134 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 EWSR1Q01844 656 aaKnown RBP eCLIP14.15□□□□□ -0.14
SHMT2-231ENST00000557433 TAF9Q16594 264 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 SP6Q3SY56 376 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 TMEM211Q6ICI0 200 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 ADAM5Q6NVV9 412 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 HEPN1Q6WQI6 88 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 ZNF100Q8IYN0 542 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 OR14L1PQ8NHC6 308 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 TECTBQ96PL2 329 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 MESP1Q9BRJ9 268 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 GPR173Q9NS66 373 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 MIOXQ9UGB7 285 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 NXT1Q9UKK6 140 aaKnown RBP14.15□□□□□ -0.14
SHMT2-231ENST00000557433 FBXO7Q9Y3I1 522 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 DUXBA0A1W2PPF3 345 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 CXorf65A6NEN9 183 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 CLN5O75503 358 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 PNLIPP16233 465 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 CRYGSP22914 178 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 LTBRP36941 435 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 RAB2AP61019 212 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 HERV-K104P61576 105 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 DPPA3Q6W0C5 159 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 MAML2Q8IZL2 1156 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-231ENST00000557433 OR2C3Q8N628 320 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 LINC00469Q8N7U9 141 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 FAM213BQ8TBF2 198 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 BORCS8Q96FH0 119 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 RASL10BQ96S79 203 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 DEFB126Q9BYW3 111 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 C11orf1Q9H5F2 150 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 KIAA1456Q9P272 454 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 ZDHHC8Q9ULC8 765 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 C5orf42Q9H799 3197 aa14.15□□□□□ -0.14
SHMT2-231ENST00000557433 ADAMTS20P59510 1910 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 XRCC2O43543 280 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 IGHV2-70P01814 119 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 FBP1P09467 338 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 NQO2P16083 231 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 RPS23P62266 143 aaKnown RBP14.14□□□□□ -0.15
SHMT2-231ENST00000557433 FAM209BQ5JX69 171 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 TMEM42Q69YG0 159 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 OSR2Q8N2R0 312 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 HSD17B11Q8NBQ5 300 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 OR52M1Q8NGK5 317 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 GNPNAT1Q96EK6 184 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-231ENST00000557433 C20orf24Q9BUV8 137 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 PLEKHF2Q9H8W4 249 aa14.14□□□□□ -0.15
SHMT2-231ENST00000557433 FOXD3Q9UJU5 478 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-231ENST00000557433 PIGBOS1A0A0B4J2F0 54 aa14.13□□□□□ -0.15
SHMT2-231ENST00000557433 FAM230AA0A1W2PPH8 454 aa14.13□□□□□ -0.15
SHMT2-231ENST00000557433 RBFOX3A6NFN3 312 aa14.13□□□□□ -0.15
SHMT2-231ENST00000557433 PHF1O43189 567 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-231ENST00000557433 DNPH1O43598 174 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms