RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 PLEKHA6Q9Y2H5 1048 aa12.24□□□□□ -0.45
SHMT2-210ENST00000553950 FASNP49327 2511 aaKnown RBP12.24□□□□□ -0.45
SHMT2-210ENST00000553950 IGKV1-12A0A0C4DH73 117 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 FAM25AB3EWG3 89 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 FAM25CB3EWG5 89 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 FAM25GB3EWG6 89 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 RHBDL1O75783 438 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 TPPPO94811 219 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 PAHP00439 452 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 F12P00748 615 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-210ENST00000553950 IGKV1D-12P01611 117 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 HPXP02790 462 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 CHRM2P08172 466 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 PAX1P15863 534 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 MUC1P15941 1255 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-210ENST00000553950 PRKACAP17612 351 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 CDKN1AP38936 164 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 RPS27AP62979 156 aaKnown RBP12.23□□□□□ -0.45
SHMT2-210ENST00000553950 UNC119Q13432 240 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 C11orf53Q8IXP5 236 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 ZCCHC24Q8N2G6 241 aaKnown RBP12.23□□□□□ -0.45
SHMT2-210ENST00000553950 NINJ1Q92982 152 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 S100A16Q96FQ6 103 aaKnown RBP12.23□□□□□ -0.45
SHMT2-210ENST00000553950 Q96M66 194 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 NKX3-1Q99801 234 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-210ENST00000553950 CHODLQ9H9P2 273 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 SEBOXQ9HB31 216 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-210ENST00000553950 HMG20AQ9NP66 347 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 DIABLOQ9NR28 239 aa12.23□□□□□ -0.45
SHMT2-210ENST00000553950 RBFOX1Q9NWB1 397 aaKnown RBP12.23□□□□□ -0.45
SHMT2-210ENST00000553950 HRNRQ86YZ3 2850 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-210ENST00000553950 A0A0B4J203 849 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 TRAV38-1A0A0B4J264 116 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 IGHV3-64DA0A0J9YX35 117 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 NKX6-3A6NJ46 265 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 SFTPBP07988 381 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 DAOP14920 347 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 NR4A2P43354 598 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 MICBQ29980 383 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 SPANXN2Q5MJ10 180 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 ACP7Q6ZNF0 438 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 ZNF826PQ6ZT77 177 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 RNF144BQ7Z419 303 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 C1QL2Q7Z5L3 287 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 MUC20Q8N307 709 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-210ENST00000553950 GCSAMQ8N6F7 178 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 CHST4Q8NCG5 386 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 OR10K1Q8NGX5 313 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 S100ZQ8WXG8 99 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 CCL17Q92583 94 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 SLC25A38Q96DW6 304 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 SELENOIQ9C0D9 397 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 ATG5Q9H1Y0 275 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 ZNF701Q9NV72 531 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-210ENST00000553950 BEX4Q9NWD9 120 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-210ENST00000553950 NLKQ9UBE8 527 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 ST3GAL6Q9Y274 331 aa12.22□□□□□ -0.45
SHMT2-210ENST00000553950 OOEPA6NGQ2 149 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 TMEM178BH3BS89 294 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 HPGDSO60760 199 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 LHBP01229 141 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 DNASE1P24855 282 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 NPBWR2P48146 333 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 ZNF146Q15072 292 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 TEX36Q5VZQ5 186 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 METAP1DQ6UB28 335 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-210ENST00000553950 LAX1Q8IWV1 398 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 TMEM104Q8NE00 496 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 OR6Q1Q8NGQ2 317 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 OR5H6Q8NGV6 325 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 GAL3ST1Q99999 423 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 GSX2Q9BZM3 304 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 DNTTIP1Q9H147 329 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 BANF2Q9H503 90 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 IFT22Q9H7X7 185 aa12.21□□□□□ -0.45
SHMT2-210ENST00000553950 GCN1Q92616 2671 aaKnown RBP12.21□□□□□ -0.46
SHMT2-210ENST00000553950 PPIAL4EA0A075B759 164 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 PPIAL4DF5H284 164 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 LGALS8O00214 317 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 SH2D1BO14796 132 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 NDUFA2O43678 99 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 RP2O75695 350 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 CYB5R3P00387 301 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-210ENST00000553950 PPIAL4FP0DN26 164 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 PTBP1P26599 531 aaKnown RBP eCLIP12.2□□□□□ -0.46
SHMT2-210ENST00000553950 PITPNBP48739 271 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 IKZF1Q13422 519 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 TMEM69Q5SWH9 247 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 PPP1R35Q8TAP8 253 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 RAB1CQ92928 201 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 DIRAS2Q96HU8 199 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 NEDD4LQ96PU5 975 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 LPAR5Q9H1C0 372 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 KCNK15Q9H427 330 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 EXTL2Q9UBQ6 330 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 PPIAL4AQ9Y536 164 aa12.2□□□□□ -0.46
SHMT2-210ENST00000553950 A0A1W2PP11 408 aa12.19□□□□□ -0.46
SHMT2-210ENST00000553950 NDUFS8O00217 210 aa12.19□□□□□ -0.46
SHMT2-210ENST00000553950 CTDSP2O14595 271 aa12.19□□□□□ -0.46
SHMT2-210ENST00000553950 XRCC3O43542 346 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms