RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SPINT2O43291 252 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 PDCD6O75340 191 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 IGF2P01344 180 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 ZNF250P15622 560 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 FPR2P25090 351 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 MST1P26927 711 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 ZDHHC22Q8N966 263 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 ZNF610Q8N9Z0 462 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 ZNF71Q9NQZ8 489 aaPredicted RBP13.16□□□□□ -0.3
CUX1-214ENST00000550008 A0A0G2JK05 382 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 RAB19A4D1S5 217 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 SPRY3O43610 288 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 SOHLH1Q5JUK2 328 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 OR10AD1Q8NGE0 317 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 HAS2Q92819 552 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 ZNF488Q96MN9 340 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 OR2H1Q9GZK4 316 aa13.16□□□□□ -0.3
CUX1-214ENST00000550008 PIGBOS1A0A0B4J2F0 54 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 A0A1W2PPV4 95 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 OR5AC1P0C628 307 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 RFPL3SP0C7P2 107 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 COX6A1P12074 109 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 ZP4Q12836 540 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 ZNF718Q3SXZ3 478 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 CLEC18BQ6UXF7 455 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 C17orf78Q8N4C9 275 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 WDSUB1Q8N9V3 476 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 ZFP62Q8NB50 900 aaPredicted RBP13.15□□□□□ -0.3
CUX1-214ENST00000550008 ADAT1Q9BUB4 502 aaKnown RBP13.15□□□□□ -0.3
CUX1-214ENST00000550008 URGCP-MRPS24S4R325 110 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 DEFB108AA8MXU0 73 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 AKR1C3P42330 323 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 GAS1P54826 345 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 RPS11P62280 158 aaKnown RBP eCLIP13.15□□□□□ -0.3
CUX1-214ENST00000550008 BAXQ07812 192 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 PDLIM3Q53GG5 364 aaPredicted RBP13.15□□□□□ -0.3
CUX1-214ENST00000550008 SPICQ8N5J4 248 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 BCL2L11O43521 198 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 IFITM2Q01629 132 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 MZT1Q08AG7 82 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 HAGHQ16775 308 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 CST9LP1Q5W188 147 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 LCN15Q6UWW0 184 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 ZBTB44Q8NCP5 570 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 OR10V1Q8NGI7 309 aa13.15□□□□□ -0.3
CUX1-214ENST00000550008 PRRG2O14669 202 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 KRASP01116 189 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 HPNP05981 417 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 ZNF266Q14584 549 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 UNQ9370/PRO34162Q6UXP9 181 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 OR11H4Q8NGC9 324 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 UNKLQ9H9P5 680 aaKnown RBP13.14□□□□□ -0.31
CUX1-214ENST00000550008 PLEKHA3Q9HB20 300 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 LNP1A1A4G5 178 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 NKX2-8O15522 239 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 DUS4LO95620 317 aaKnown RBP13.14□□□□□ -0.31
CUX1-214ENST00000550008 GLAP06280 429 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 PSG4Q00888 419 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 OR2Z1Q8NG97 314 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 OR5M8Q8NGP6 311 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 CXorf58Q96LI9 332 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 IER2Q9BTL4 223 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 KIF25Q9UIL4 384 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 FANCMQ8IYD8 2048 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 A0A0B4J293 547 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 RPS10-NUDT3A0A1W2PQS6 291 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 PRSS44E7EML9 344 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 ENSAO43768 121 aaKnown RBP13.14□□□□□ -0.31
CUX1-214ENST00000550008 AGFG2O95081 481 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 SFT2D2O95562 160 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 GP1BAP07359 652 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 AADACP22760 399 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 RPS10P46783 165 aaKnown RBP13.14□□□□□ -0.31
CUX1-214ENST00000550008 ZNF816Q0VGE8 651 aaPredicted RBP13.14□□□□□ -0.31
CUX1-214ENST00000550008 RNPS1Q15287 305 aaKnown RBP13.14□□□□□ -0.31
CUX1-214ENST00000550008 LINC00114Q6XXX2 140 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 SF3B5Q9BWJ5 86 aaKnown RBP13.14□□□□□ -0.31
CUX1-214ENST00000550008 ANGPTL4Q9BY76 406 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 SLC25A32Q9H2D1 315 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 PIGMQ9H3S5 423 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 AK3Q9UIJ7 227 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 PCDHB10Q9UN67 800 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 VSIG4Q9Y279 399 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 CACNA1BQ00975 2339 aa13.14□□□□□ -0.31
CUX1-214ENST00000550008 FIGNL2A6NMB9 653 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 CALCRP30988 508 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 ALDH3B1P43353 468 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 FAM58AQ8N1B3 248 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 TMEM251Q8N6I4 163 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 SCCPDHQ8NBX0 429 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 OR11L1Q8NGX0 322 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 ANXA10Q9UJ72 324 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 SHANK1Q9Y566 2161 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 LINC01387J3KSC0 135 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 K7ESF4 209 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 TLE1Q04724 770 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 SNAI3Q3KNW1 292 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 CLLU1Q5K131 121 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 GGNBP1Q5YKI7 109 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 TMEM123Q8N131 208 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms