RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 MNDAP41218 407 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 RPL23AP62750 156 aaKnown RBP13.47□□□□□ -0.25
VPS29-204ENST00000548259 IL24Q13007 206 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 SNAPC1Q16533 368 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 SLC35D3Q5M8T2 416 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 TRAPPC6BQ86SZ2 158 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 BCAS4Q8TDM0 211 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 TEX12Q9BXU0 123 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 PKIBQ9C010 78 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 DNAJB9Q9UBS3 223 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 SLC7A11Q9UPY5 501 aa13.47□□□□□ -0.25
VPS29-204ENST00000548259 SAMHD1Q9Y3Z3 626 aaKnown RBP13.47□□□□□ -0.25
VPS29-204ENST00000548259 ZNF737O75373 536 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 CD24P25063 80 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 SLC35B1P78383 322 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 BDH1Q02338 343 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 CCDC144NLQ6NUI1 221 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 CD300LDQ6UXZ3 194 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 ETV3LQ6ZN32 361 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 BATF2Q8N1L9 274 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 ABHD12Q8N2K0 398 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 CHPT1Q8WUD6 406 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 TEAD3Q99594 435 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 YIPF3Q9GZM5 350 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 GPR173Q9NS66 373 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 NUFIP1Q9UHK0 495 aaKnown RBP13.46□□□□□ -0.25
VPS29-204ENST00000548259 GTF2A1LQ9UNN4 478 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 TMEM14AQ9Y6G1 99 aa13.46□□□□□ -0.25
VPS29-204ENST00000548259 HMGN1P05114 100 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 FAM106CPP0CH98 169 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 GABRR1P24046 479 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 RIDAP52758 137 aaKnown RBP13.45□□□□□ -0.26
VPS29-204ENST00000548259 ERVK11-1P61568 191 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 GRK1Q15835 563 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 SPATS1Q496A3 300 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 C10orf99Q6UWK7 81 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 OR2W3Q7Z3T1 314 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 ENTHD1Q8IYW4 607 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 COMMD1Q8N668 190 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 IQCF1Q8N6M8 205 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 Q8NFD4 153 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 OR4P4Q8NGL7 312 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 ASB17Q8WXJ9 295 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 CEP19Q96LK0 163 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 GAL3ST2Q9H3Q3 398 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 MOB1AQ9H8S9 216 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 KLHDC2Q9Y2U9 406 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 U3KQV3 271 aa13.45□□□□□ -0.26
VPS29-204ENST00000548259 FUOMA2VDF0 154 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 TOR1AO14656 332 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 RAB25P57735 213 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 ACTR3P61158 418 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 GK3PQ14409 553 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 TMEM42Q69YG0 159 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 C8orf86Q6ZUL3 223 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 ZNF679Q8IYX0 411 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 PGAM4Q8N0Y7 254 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 KLHL30-AS1Q8NEE0 82 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 MUC7Q8TAX7 377 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 CCDC134Q9H6E4 229 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 IKZF2Q9UKS7 526 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 UBE2J1Q9Y385 318 aaPredicted RBP13.44□□□□□ -0.26
VPS29-204ENST00000548259 MOB4Q9Y3A3 225 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 HSPE1-MOB4S4R3N1 261 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 STAB2Q8WWQ8 2551 aa13.44□□□□□ -0.26
VPS29-204ENST00000548259 TRGV10A0A0A0MS01 117 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 DHRS7CA6NNS2 312 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 OOSP1A8MZH6 123 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 IGLV3-1P01715 115 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 MAGEA2P43356 314 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 OR3A4PP47883 348 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 PPP1R8Q12972 351 aaKnown RBP13.43□□□□□ -0.26
VPS29-204ENST00000548259 BCL2L15Q5TBC7 163 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 OR2T5Q6IEZ7 315 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 ZNF329Q86UD4 541 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 ANGPTL5Q86XS5 388 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 EGFL6Q8IUX8 553 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 Q8IYB0 196 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 OR10G2Q8NGC3 310 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 OR2T29Q8NH02 315 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 CDRT15Q96T59 188 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 PLEKHA1Q9HB21 404 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 SEBOXQ9HB31 216 aaPredicted RBP13.43□□□□□ -0.26
VPS29-204ENST00000548259 PCDHB16Q9NRJ7 776 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 NDE1Q9NXR1 346 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 TAS2R1Q9NYW7 299 aa13.43□□□□□ -0.26
VPS29-204ENST00000548259 FAM230AA0A1W2PPH8 454 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 ARRDC5A6NEK1 342 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 SERPINE3A8MV23 424 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 LOC110117498-PIK3R3F6TDL0 507 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 MGST3O14880 152 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 HAND1O96004 215 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 CYB5AP00167 134 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 PRRX1P54821 245 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 ROM1Q03395 351 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 CASC10Q5T4H9 136 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 C9orf66Q5T8R8 295 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 TCF23Q7RTU1 214 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 CPOQ8IVL8 374 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 ZNF695Q8IW36 515 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms