RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 IGHV1-69P01742 117 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 MT-ND2P03891 347 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 PRTN3P24158 256 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 GTF2A1P52655 376 aaPredicted RBP12.95□□□□□ -0.34
CCDC78-216ENST00000544996 GUCA2AQ02747 115 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 OR2G6Q5TZ20 316 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 C1orf122Q6ZSJ8 110 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 TBC1D15Q8TC07 691 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 GGHQ92820 318 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 GCDHQ92947 438 aaPredicted RBP12.95□□□□□ -0.34
CCDC78-216ENST00000544996 EMG1Q92979 244 aaKnown RBP12.95□□□□□ -0.34
CCDC78-216ENST00000544996 SLC25A28Q96A46 364 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 FAM234AQ9H0X4 552 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 ELL3Q9HB65 397 aaPredicted RBP12.95□□□□□ -0.34
CCDC78-216ENST00000544996 BABAM2Q9NXR7 383 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 NKX1-2Q9UD57 310 aaPredicted RBP12.95□□□□□ -0.34
CCDC78-216ENST00000544996 DOCK11Q5JSL3 2073 aa12.95□□□□□ -0.34
CCDC78-216ENST00000544996 DNAJC9-AS1A6NH13 148 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 M0R1W7 72 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 ALX3O95076 343 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 CD2P06729 351 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 CHRM2P08172 466 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 PIPP12273 146 aaPredicted RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 CEBPDP49716 269 aaPredicted RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 RPL31P62899 125 aaKnown RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 ST3GAL4Q11206 333 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 PDZK1IP1Q13113 114 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 CDK5R1Q15078 307 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 METAP1DQ6UB28 335 aaPredicted RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 FAM185AQ8N0U4 392 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 PARP16Q8N5Y8 322 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 ASCC1Q8N9N2 400 aaKnown RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 OR52N1Q8NH53 320 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 GPR148Q8TDV2 347 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 TFAP2CQ92754 450 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 CPNE2Q96FN4 548 aaPredicted RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 METTL8Q9H825 291 aaKnown RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 NOX4Q9NPH5 578 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 CNOT2Q9NZN8 540 aaKnown RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 GLS2Q9UI32 602 aa12.94□□□□□ -0.34
CCDC78-216ENST00000544996 SOX21Q9Y651 276 aaPredicted RBP12.94□□□□□ -0.34
CCDC78-216ENST00000544996 F8VVB4 439 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 F8VWA3 439 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 CLDN34H7C241 214 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 MAGEB3O15480 346 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 SPRY1O43609 319 aaPredicted RBP12.93□□□□□ -0.34
CCDC78-216ENST00000544996 SULT1B1O43704 296 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 TK1P04183 234 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 HCKP08631 526 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 EEF1B2P24534 225 aaKnown RBP12.93□□□□□ -0.34
CCDC78-216ENST00000544996 COL10A1Q03692 680 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 DEFB112Q30KQ8 113 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 RUSC1-AS1Q66K80 236 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 NCR3LG1Q68D85 454 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 PDZD9Q8IXQ8 264 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 FAM58AQ8N1B3 248 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 STX19Q8N4C7 294 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 BPIFB6Q8NFQ5 453 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 DUX5Q96PT3 197 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 SIRT7Q9NRC8 400 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 PLCXD1Q9NUJ7 323 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 CLEC2DQ9UHP7 191 aa12.93□□□□□ -0.34
CCDC78-216ENST00000544996 MDFIC2A0A1B0GVS7 189 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 hCG_1809904A0A1W2PP81 198 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 A0A1W2PPE2 198 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 A0A1W2PR64 198 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 A0A1W2PRV1 198 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 H0YHG0 523 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 H0YJX3 145 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 K7N7A8 449 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 OGG1O15527 345 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 XPNPEP2O43895 674 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 RAB3AP20336 220 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 NPBWR2P48146 333 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 SOX2P48431 317 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 SLC9A3R2Q15599 337 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 XAF1Q6GPH4 301 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 C12orf54Q6X4T0 127 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 AHSA2Q719I0 299 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 SAXO1Q8IYX7 474 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 Q8N7P7 452 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 OR5D13Q8NGL4 314 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 FBLIM1Q8WUP2 373 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 RFT1Q96AA3 541 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 SMIM19Q96E16 107 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 SPACA5Q96QH8 159 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 VCX3BQ9H321 246 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 PRDM13Q9H4Q3 707 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 SEBOXQ9HB31 216 aaPredicted RBP12.92□□□□□ -0.34
CCDC78-216ENST00000544996 C19orf12Q9NSK7 152 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 RBFOX1Q9NWB1 397 aaKnown RBP12.92□□□□□ -0.34
CCDC78-216ENST00000544996 PSORS1C1Q9UIG5 152 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 ZNF281Q9Y2X9 895 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 FAM96BQ9Y3D0 163 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 PCDHGB5Q9Y5G0 923 aa12.92□□□□□ -0.34
CCDC78-216ENST00000544996 HOXA3O43365 443 aaPredicted RBP12.91□□□□□ -0.34
CCDC78-216ENST00000544996 HAND1O96004 215 aa12.91□□□□□ -0.34
CCDC78-216ENST00000544996 RNASE1P07998 156 aaKnown RBP12.91□□□□□ -0.34
CCDC78-216ENST00000544996 TMEM225BP0DP42 221 aa12.91□□□□□ -0.34
CCDC78-216ENST00000544996 PRKACAP17612 351 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms