RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 F8VVB4 439 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 F8VWA3 439 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 ST8SIA5O15466 376 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 RPS2P15880 293 aaKnown RBP8.55□□□□□ -1.04
SS18-205ENST00000542420 AKR1C4P17516 323 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 VAMP1P23763 118 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 MALLQ13021 153 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 IGF2-ASQ6U949 168 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 CLEC18BQ6UXF7 455 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 AKR7LQ8NHP1 331 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 NANOS1Q8WY41 292 aaKnown RBP8.55□□□□□ -1.04
SS18-205ENST00000542420 GTF3AQ92664 365 aaKnown RBP8.55□□□□□ -1.04
SS18-205ENST00000542420 APH1AQ96BI3 265 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 ZNF845Q96IR2 970 aaPredicted RBP8.55□□□□□ -1.04
SS18-205ENST00000542420 C2orf50Q96LR7 162 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 GLRX2Q9NS18 164 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 ZFP57Q9NU63 452 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 C1orf123Q9NWV4 160 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 RASL12Q9NYN1 266 aa8.55□□□□□ -1.04
SS18-205ENST00000542420 MASP2O00187 686 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 PDCD6O75340 191 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 HTR3BO95264 441 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 FABP1P07148 127 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 ACAA1P09110 424 aaPredicted RBP8.54□□□□□ -1.04
SS18-205ENST00000542420 SERPINF1P36955 418 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 EIF5AP63241 154 aaKnown RBP8.54□□□□□ -1.04
SS18-205ENST00000542420 ARF1P84077 181 aaKnown RBP8.54□□□□□ -1.04
SS18-205ENST00000542420 PLGLB1Q02325 96 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 ZNF92Q03936 586 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 IL15RAQ13261 267 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 HES3Q5TGS1 186 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 PRSS54Q6PEW0 395 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 DTX1Q86Y01 620 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 TMEM178AQ8NBL3 297 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 CMSS1Q9BQ75 279 aaKnown RBP8.54□□□□□ -1.04
SS18-205ENST00000542420 PLK3Q9H4B4 646 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 PLSCR2Q9NRY7 297 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 SLC7A10Q9NS82 523 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 IGKV1-27A0A075B6S5 117 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 PIGBOS1A0A0B4J2F0 54 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 GATCO43716 136 aaKnown RBP8.54□□□□□ -1.04
SS18-205ENST00000542420 LRP3O75074 770 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 EDN3P14138 238 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 MEOX1P50221 254 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 RBM11P57052 281 aaKnown RBP8.54□□□□□ -1.04
SS18-205ENST00000542420 SUPT4H1P63272 117 aaKnown RBP8.54□□□□□ -1.04
SS18-205ENST00000542420 MOB3CQ70IA8 216 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 PIP4P1Q86T03 277 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 LRTM2Q8N967 370 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 OR5D18Q8NGL1 313 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 OR2AE1Q8NHA4 323 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 GALNT14Q96FL9 552 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 AQP10Q96PS8 301 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 ST6GALNAC5Q9BVH7 336 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 ELL3Q9HB65 397 aaPredicted RBP8.54□□□□□ -1.04
SS18-205ENST00000542420 ZNF286AQ9HBT8 521 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 NDRG3Q9UGV2 375 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 GPR160Q9UJ42 338 aa8.54□□□□□ -1.04
SS18-205ENST00000542420 CRYM-AS1A6NIL9 109 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 TAAR5O14804 337 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 TNFSF15O95150 251 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 IFNA2P01563 188 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 FCGR3AP08637 254 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 NPY4RP50391 375 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 SSTP61278 116 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 SLC10A1Q14973 349 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 MPV17LQ2QL34 196 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 PLCXD3Q63HM9 321 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 SGPP2Q8IWX5 399 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 FAM185AQ8N0U4 392 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 NPRL2Q8WTW4 380 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 EDARADDQ8WWZ3 215 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 BOD1Q96IK1 185 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 SUCNR1Q9BXA5 334 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 FAM86C1Q9NVL1 165 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 FAM230AA0A1W2PPH8 454 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 C5orf51A6NDU8 294 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 FUT3P21217 361 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 GABRR1P24046 479 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 MAGEA5P43359 124 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 PLP2Q04941 152 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 Q3ZCU0 254 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 C6orf201Q7Z4U5 140 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 MCEMP1Q8IX19 187 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 MKXQ8IYA7 352 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 POC1AQ8NBT0 407 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 OR5A2Q8NGI9 324 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 OR10K1Q8NGX5 313 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 FGFBP3Q8TAT2 258 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 CASTOR1Q8WTX7 329 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 PRRG4Q9BZD6 226 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 RIMS4Q9H426 269 aaPredicted RBP8.53□□□□□ -1.04
SS18-205ENST00000542420 ZDHHC11Q9H8X9 412 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 ZNF230Q9UIE0 474 aaPredicted RBP8.53□□□□□ -1.04
SS18-205ENST00000542420 AK3Q9UIJ7 227 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 MPC1Q9Y5U8 109 aa8.53□□□□□ -1.04
SS18-205ENST00000542420 TRIOO75962 3097 aa8.52□□□□□ -1.04
SS18-205ENST00000542420 SIGLEC5O15389 551 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 CNOT4O95628 575 aaKnown RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 RBMXP38159 391 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms