RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TK1P04183 234 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 CCDC159P0C7I6 412 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 HKR1P10072 659 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 ZNF20P17024 532 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 PRKACBP22694 351 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 CAPGP40121 348 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 NPBWR2P48146 333 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 GTF2A1P52655 376 aaPredicted RBP11.63□□□□□ -0.55
USP28-209ENST00000540925 ATP1B3P54709 279 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 DLX1P56177 255 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 ACTG1P63261 375 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 PDZK1IP1Q13113 114 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 CCDC58Q4VC31 144 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 HCP5Q6MZN7 132 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 LHFPL2Q6ZUX7 228 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 CMTM4Q8IZR5 234 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 TMEM86BQ8N661 226 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 SETD9Q8NE22 299 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 OR13C3Q8NGS6 347 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 OR5AK2Q8NH90 309 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 SLAMF9Q96A28 289 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 OPALINQ96PE5 141 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 DCLRE1BQ9H816 532 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 METTL8Q9H825 291 aaKnown RBP11.63□□□□□ -0.55
USP28-209ENST00000540925 SIRT7Q9NRC8 400 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 NKX1-2Q9UD57 310 aaPredicted RBP11.63□□□□□ -0.55
USP28-209ENST00000540925 SIRT4Q9Y6E7 314 aaPredicted RBP11.63□□□□□ -0.55
USP28-209ENST00000540925 TRRAPQ9Y4A5 3859 aa11.63□□□□□ -0.55
USP28-209ENST00000540925 IGKV1-12A0A0C4DH73 117 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 TRBV2A0A0J9YWF9 115 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 A0A0U1RQK1 487 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 IRGMA1A4Y4 181 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 HOXA3O43365 443 aaPredicted RBP11.62□□□□□ -0.55
USP28-209ENST00000540925 LALBAP00709 142 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 IGKV1D-12P01611 117 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 MELTFP08582 738 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 PIPP12273 146 aaPredicted RBP11.62□□□□□ -0.55
USP28-209ENST00000540925 GBX2P52951 348 aaPredicted RBP11.62□□□□□ -0.55
USP28-209ENST00000540925 DLX6P56179 175 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 MTCP1P56278 107 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 ZNF146Q15072 292 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 CDK5R1Q15078 307 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 OR2G6Q5TZ20 316 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 TMEM200BQ69YZ2 307 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 RPL22L1Q6P5R6 122 aaKnown RBP11.62□□□□□ -0.55
USP28-209ENST00000540925 LDLRAD3Q86YD5 345 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 Q8IYB0 196 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 OR13C9Q8NGT0 318 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 TFAP2CQ92754 450 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 GGHQ92820 318 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 GCDHQ92947 438 aaPredicted RBP11.62□□□□□ -0.55
USP28-209ENST00000540925 SLC25A28Q96A46 364 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 AJUBAQ96IF1 538 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 ZCCHC4Q9H5U6 513 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 RBFOX1Q9NWB1 397 aaKnown RBP11.62□□□□□ -0.55
USP28-209ENST00000540925 IL36RNQ9UBH0 155 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 CLEC2DQ9UHP7 191 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 CMYA5Q8N3K9 4069 aa11.62□□□□□ -0.55
USP28-209ENST00000540925 TMEM82A0PJX8 343 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 OGG1O15527 345 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 KDM4BO94953 1096 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 CHRM2P08172 466 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 BCL3P20749 454 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 CFPP27918 469 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 UBE2E1P51965 193 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 ZP1P60852 638 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 RPL31P62899 125 aaKnown RBP11.61□□□□□ -0.55
USP28-209ENST00000540925 GUCA2AQ02747 115 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 COL10A1Q03692 680 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 PRB3Q04118 309 aaPredicted RBP11.61□□□□□ -0.55
USP28-209ENST00000540925 GABPB1Q06547 395 aaPredicted RBP11.61□□□□□ -0.55
USP28-209ENST00000540925 KLRD1Q13241 179 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 AWAT1Q58HT5 328 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 C17orf107Q6ZR85 190 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 PDZD9Q8IXQ8 264 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 MKXQ8IYA7 352 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 OR52N1Q8NH53 320 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 PLCXD1Q9NUJ7 323 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 FKBP14Q9NWM8 211 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 CNOT2Q9NZN8 540 aaKnown RBP11.61□□□□□ -0.55
USP28-209ENST00000540925 OR14J1Q9UGF5 321 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 EXOSC1Q9Y3B2 195 aaKnown RBP11.61□□□□□ -0.55
USP28-209ENST00000540925 POMT1Q9Y6A1 747 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 DSCAML1Q8TD84 2053 aa11.61□□□□□ -0.55
USP28-209ENST00000540925 A0A1W2PQ09 198 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 NPFFO15130 113 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 SPRY1O43609 319 aaPredicted RBP11.6□□□□□ -0.55
USP28-209ENST00000540925 SULT1B1O43704 296 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 CAPZA1P52907 286 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 DOC2BQ14184 412 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 ZNF273Q14593 569 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 SPIN3Q5JUX0 258 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 NCR3LG1Q68D85 454 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 DMKNQ6E0U4 476 aaPredicted RBP11.6□□□□□ -0.55
USP28-209ENST00000540925 C16orf87Q6PH81 154 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 C12orf54Q6X4T0 127 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 TCF23Q7RTU1 214 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 SERPINA12Q8IW75 414 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 SAXO1Q8IYX7 474 aa11.6□□□□□ -0.55
USP28-209ENST00000540925 C8orf59Q8N0T1 100 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms