RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CTRLP40313 264 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 VAMP3Q15836 100 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 ADIRFQ15847 76 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 ACSF3Q4G176 576 aaPredicted RBP10.91□□□□□ -0.66
USP3-203ENST00000538686 DCST2Q5T1A1 773 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 CST9LP1Q5W188 147 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 Q6ZWC4 215 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 SPRED2Q7Z698 418 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 SULF2Q8IWU5 870 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 SLC22A24Q8N4F4 322 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 ABHD3Q8WU67 409 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 SCAMP4Q969E2 229 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 MRPL24Q96A35 216 aaKnown RBP10.91□□□□□ -0.66
USP3-203ENST00000538686 LRRC3BQ96PB8 259 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 LPAR5Q9H1C0 372 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 R3HDMLQ9H3Y0 253 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 GNG13Q9P2W3 67 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 TAC3Q9UHF0 121 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 RCL1Q9Y2P8 373 aaKnown RBP10.91□□□□□ -0.66
USP3-203ENST00000538686 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.91□□□□□ -0.66
USP3-203ENST00000538686 RHBDD3Q9Y3P4 386 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 ZNF320A2RRD8 509 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 TNFSF15O95150 251 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 PDGFBP01127 241 aaPredicted RBP10.91□□□□□ -0.66
USP3-203ENST00000538686 ERGP11308 486 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 SCGB1A1P11684 91 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 UNC119Q13432 240 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 ITPRIPL2Q3MIP1 535 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 TDRG1Q3Y452 100 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 DPY19L4Q7Z388 723 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 AMZ2Q86W34 360 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 C1orf174Q8IYL3 243 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 LRTM2Q8N967 370 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 ZNF709Q8N972 641 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 CPT1CQ8TCG5 803 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 VN1R17PQ8TDU5 208 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 RASL10BQ96S79 203 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 FEZF1A0PJY2 475 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 RENP00797 406 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 ISG15P05161 165 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 CD55P08174 381 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 IGLC2P0DOY2 106 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 IGLC3P0DOY3 106 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 HIST1H1DP16402 221 aaKnown RBP10.9□□□□□ -0.66
USP3-203ENST00000538686 EMP2P54851 167 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 ROM1Q03395 351 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 SPATA45Q537H7 98 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 KCTD18Q6PI47 426 aaPredicted RBP10.9□□□□□ -0.66
USP3-203ENST00000538686 OR2C3Q8N628 320 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 METTL27Q8N6F8 245 aaPredicted RBP10.9□□□□□ -0.66
USP3-203ENST00000538686 OR5AU1Q8NGC0 362 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 DYRK2Q92630 601 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 LOXL4Q96JB6 756 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 CALHM2Q9HA72 323 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 CLN8Q9UBY8 286 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 TRAPPC1Q9Y5R8 145 aa10.9□□□□□ -0.66
USP3-203ENST00000538686 SCN2AQ99250 2005 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 ZNF814B7Z6K7 855 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 TRAPPC6AO75865 159 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 PIAS2O75928 621 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 ZP2Q05996 745 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 SNAI3Q3KNW1 292 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 SLC18B1Q6NT16 456 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 UNQ5815/PRO19632Q6UWF5 114 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 ZNF467Q7Z7K2 595 aaPredicted RBP10.89□□□□□ -0.67
USP3-203ENST00000538686 COMMD2Q86X83 199 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 TMEM123Q8N131 208 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 LRRC25Q8N386 305 aaPredicted RBP10.89□□□□□ -0.67
USP3-203ENST00000538686 TCTEX1D1Q8N7M0 179 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 REEP6Q96HR9 211 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 RNF24Q9Y225 148 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 SLC22A13Q9Y226 551 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 SLC5A6Q9Y289 635 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 PXMP4Q9Y6I8 212 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 FAM221AA4D161 298 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 TMEM14DPA8MWL7 114 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 COCHO43405 550 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 SMPD2O60906 423 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 HYPMO75409 117 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 GJB5O95377 273 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 VSIG8P0DPA2 414 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 MMP9P14780 707 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 GABRA2P47869 451 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 RPL15P61313 204 aaKnown RBP10.89□□□□□ -0.67
USP3-203ENST00000538686 MRPS6P82932 125 aaKnown RBP10.89□□□□□ -0.67
USP3-203ENST00000538686 BAXQ07812 192 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 MEP1BQ16820 701 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 CTXN3Q4LDR2 81 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 ZNF468Q5VIY5 522 aaPredicted RBP10.89□□□□□ -0.67
USP3-203ENST00000538686 MRGPRGQ86SM5 289 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 TMEM256Q8N2U0 113 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 NECAP1Q8NC96 275 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 WDYHV1Q96HA8 205 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 SMIM7Q9BQ49 75 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 PLEKHF2Q9H8W4 249 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 MANBALQ9NQG1 85 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 ZNF581Q9P0T4 197 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 INSL5Q9Y5Q6 135 aa10.89□□□□□ -0.67
USP3-203ENST00000538686 VWA8A3KMH1 1905 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 DUXBA0A1W2PPF3 345 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms