RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 OR51S1Q8NGJ8 323 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 TNFAIP8L1Q8WVP5 186 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 CCL19Q99731 98 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 C1QTNF5Q9BXJ0 243 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 SELENOIQ9C0D9 397 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 CST11Q9H112 138 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 ESRP2Q9H6T0 727 aaKnown RBP10.23□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF107Q9UII5 783 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-208ENST00000537004 EDARQ9UNE0 448 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 RNF115Q9Y4L5 304 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 LOC100509620A0A075B734 347 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 hCG_38984A0A1B0GV85 526 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF503-AS2A6NEH8 195 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF736B4DX44 427 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-208ENST00000537004 RAB3DO95716 219 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 HPXP02790 462 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 CD3EP07766 207 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 MPGP29372 298 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF92Q03936 586 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 FAM189A2Q15884 450 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 METTL11BQ5VVY1 283 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 TRAPPC6BQ86SZ2 158 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 KRTAP1-3Q8IUG1 177 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 NUDCD2Q8WVJ2 157 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 GINS4Q9BRT9 223 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 GON7Q9BXV9 100 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 GHRLQ9UBU3 117 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 ING4Q9UNL4 249 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 LAMP3Q9UQV4 416 aa10.22□□□□□ -0.77
CLIP1-208ENST00000537004 ABCD4O14678 606 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 HS3ST1O14792 307 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 XRCC2O43543 280 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 SSNA1O43805 119 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 C1QBP02746 253 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 SOD3P08294 240 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 CD79AP11912 226 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 HOXC12P31275 282 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 RAD52P43351 418 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 MECP2P51608 486 aaKnown RBP10.21□□□□□ -0.77
CLIP1-208ENST00000537004 FAM3AP98173 230 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 GLDNQ6ZMI3 551 aaPredicted RBP10.21□□□□□ -0.77
CLIP1-208ENST00000537004 COLCA1Q6ZS62 124 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 RTN4RL2Q86UN3 420 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 SPSB1Q96BD6 273 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 PERPQ96FX8 193 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 MS4A3Q96HJ5 214 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 S100A13Q99584 98 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 DHRS9Q9BPW9 319 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 USB1Q9BQ65 265 aaKnown RBP10.21□□□□□ -0.77
CLIP1-208ENST00000537004 URM1Q9BTM9 101 aaKnown RBP10.21□□□□□ -0.77
CLIP1-208ENST00000537004 NGBQ9NPG2 151 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 PRELID1Q9Y255 219 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 DSCAMO60469 2012 aa10.21□□□□□ -0.77
CLIP1-208ENST00000537004 TLN2Q9Y4G6 2542 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 SHISA9B4DS77 424 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 M0QYG6 137 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 M0R1B8 84 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 SOCS1O15524 211 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 CD74P04233 296 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 COX5BP10606 129 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 MGMTP16455 207 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 CXCL3P19876 107 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 ANXA7P20073 488 aaKnown RBP10.21□□□□□ -0.78
CLIP1-208ENST00000537004 ARR3P36575 388 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 MTCP1P56278 107 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 RPS27AP62979 156 aaKnown RBP10.21□□□□□ -0.78
CLIP1-208ENST00000537004 CNN3Q15417 329 aaKnown RBP10.21□□□□□ -0.78
CLIP1-208ENST00000537004 OR8B8Q15620 311 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 PLAC9Q5JTB6 97 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 CLVS2Q5SYC1 327 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 TMEM42Q69YG0 159 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 OR4S1Q8NGB4 309 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 OR56B1Q8NGI3 324 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 SPSB4Q96A44 273 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 RAB3CQ96E17 227 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 SEC22CQ9BRL7 303 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 TINAGL1Q9GZM7 467 aaPredicted RBP10.21□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF222Q9UK12 451 aa10.21□□□□□ -0.78
CLIP1-208ENST00000537004 FAM230AA0A1W2PPH8 454 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 C5orf49A4QMS7 147 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 SMLR1H3BR10 107 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 NRASP01111 189 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 AMY2AP04746 511 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 RLN1P04808 185 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 GSTP1P09211 210 aaKnown RBP10.2□□□□□ -0.78
CLIP1-208ENST00000537004 SULT1A3P0DMM9 295 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 SULT1A4P0DMN0 295 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 CCL2P13500 99 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 HIST1H1DP16402 221 aaKnown RBP10.2□□□□□ -0.78
CLIP1-208ENST00000537004 SERPINA2P20848 420 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 CCNOP22674 350 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 PRKACBP22694 351 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 RAB1AP62820 205 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 NKX6-1P78426 367 aaPredicted RBP10.2□□□□□ -0.78
CLIP1-208ENST00000537004 TGFBR3Q03167 851 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 C20orf204Q6ZNR8 217 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 TGIF2LYQ8IUE0 185 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 GVQW1Q8N7I0 195 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 OR51T1Q8NGJ9 327 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 OR10K1Q8NGX5 313 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms