RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 GBF1Q92538 1859 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 hCG_1818297A0A087WSY0 165 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 GABARAPH6UMI1 98 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 H7BYZ3 331 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 K7EPK0 472 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 YPEL1O60688 119 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 PSMD10O75832 226 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 DUS4LO95620 317 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 SOD1P00441 154 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 C1RP00736 705 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 CGAP01215 116 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 GBAP04062 536 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 SERPINE2P07093 398 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ERGP11308 486 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 CD1DP15813 335 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 HIST1H1DP16402 221 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 HIST1H1CP16403 213 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 RPS4Y1P22090 263 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 GLIPR1P48060 266 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 SULT1A2P50226 295 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 GPM6AP51674 278 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 RAB38P57729 211 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 UBE2KP61086 200 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 CYCSP99999 105 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 BCL2L1Q07817 233 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 FUT7Q11130 342 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 RBM39Q14498 530 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 SNRNP35Q16560 246 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 PRICKLE4Q2TBC4 344 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ANKRD55Q3KP44 614 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 KRTAP15-1Q3LI76 137 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 LRRC73Q5JTD7 316 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 SOHLH1Q5JUK2 328 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 OR2T5Q6IEZ7 315 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 C11orf87Q6NUJ2 197 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 FAAP20Q6NZ36 180 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ENPP7Q6UWV6 458 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 DNM1P46Q6ZS02 220 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 SMIM5Q71RC9 77 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 FAM71E2Q8N5Q1 922 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 SLC5A8Q8N695 610 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 TMEM217Q8N7C4 229 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 RELL2Q8NC24 303 aaPredicted RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 B3GNT7Q8NFL0 401 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 OR51T1Q8NGJ9 327 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 OR2T29Q8NH02 315 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 NFKBIDQ8NI38 313 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ABHD5Q8WTS1 349 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 SPRYD4Q8WW59 207 aaPredicted RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 TSLPQ969D9 159 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 IL22RA2Q969J5 263 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 MOAP1Q96BY2 351 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 SEH1LQ96EE3 360 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 IMP4Q96G21 291 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 GRAMD2BQ96HH9 432 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 THOC3Q96J01 351 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 VSTM2LQ96N03 204 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ZFP3Q96NJ6 502 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 YPEL2Q96QA6 119 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 TNFRSF13CQ96RJ3 184 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 GPR22Q99680 433 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ASCL2Q99929 193 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ZNF649Q9BS31 505 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 PHF7Q9BWX1 381 aaPredicted RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 ULBP2Q9BZM5 246 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 OR11A1Q9GZK7 315 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 MFSD1Q9H3U5 465 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 C1orf198Q9H425 327 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 PIGVQ9NUD9 493 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 AIG1Q9NVV5 245 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ZNF586Q9NXT0 402 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 DNAJC27Q9NZQ0 273 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 CCDC167Q9P0B6 97 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 ABRACLQ9P1F3 81 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 KCNK6Q9Y257 313 aa4.78□□□□□ -1.64
CD44-236ENST00000533222 RPL36Q9Y3U8 105 aaKnown RBP4.78□□□□□ -1.64
CD44-236ENST00000533222 NUP210LQ5VU65 1888 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 FXYD6-FXYD2A0A087WZ82 144 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 LRP5LA4QPB2 252 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 PSMB11A5LHX3 300 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 XRCC2O43543 280 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 TRAF3IP2O43734 574 aaPredicted RBP4.77□□□□□ -1.65
CD44-236ENST00000533222 FARS2O95363 451 aaKnown RBP4.77□□□□□ -1.65
CD44-236ENST00000533222 TNFRSF6BO95407 300 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 CDS2O95674 445 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 PMS2P2O95744 297 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 HAND1O96004 215 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 APOC2P02655 101 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 GAPDHP04406 335 aaKnown RBP4.77□□□□□ -1.65
CD44-236ENST00000533222 IGLC1P0CG04 106 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 ACP2P11117 423 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 LYL1P12980 280 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 EPCAMP16422 314 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 LMO1P25800 156 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 CD27P26842 260 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 S100A7P31151 101 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 DLSTP36957 453 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 CTRLP40313 264 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 ID1P41134 155 aa4.77□□□□□ -1.65
CD44-236ENST00000533222 DNASE1L1P49184 302 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms