RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MAFIPQ8WZ33 124 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 FN3KRPQ9HA64 309 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 CA10Q9NS85 328 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 MGAT4CQ9UBM8 478 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 BOLA1Q9Y3E2 137 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 F8VVB4 439 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 F8VWA3 439 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 PDCD6O75340 191 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 FAM87AP0C7U9 286 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 CECR9P0C854 216 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 TAS2R46P59540 309 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 GNG3P63215 75 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 C4orf46Q504U0 113 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 NHLRC3Q5JS37 347 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 MKXQ8IYA7 352 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 TERB2Q8NHR7 220 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 ZFAND1Q8TCF1 268 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 HYLS1Q96M11 299 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 SFXN3Q9BWM7 321 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 PLSCR3Q9NRY6 295 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 SLC25A15Q9Y619 301 aa17.71■□□□□ 0.43
VPS28-209ENST00000528142 IGKV1D-8A0A087WSZ0 117 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A10PA6NDY2 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A18PA6NE21 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A16PA6NEW6 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A20PA6NIJ5 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A8PA6NJQ4 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A7PA6NKC0 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A22PA8MWA6 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A12PA8MX19 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A5PA8MXJ8 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A23PA8MXZ1 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A15PP0C7V4 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A13PP0C7W8 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A14PP0C7W9 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FAM90A24PP0C7X0 464 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 GLI4P10075 376 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 UCNP55089 124 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FGF12P61328 243 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 CDK10Q15131 360 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 C17orf107Q6ZR85 190 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 SLC25A42Q86VD7 318 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 ZNF573Q86YE8 665 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 BATF2Q8N1L9 274 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 OR5AP2Q8NGF4 316 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 ZCCHC14Q8WYQ9 949 aaKnown RBP17.7■□□□□ 0.42
VPS28-209ENST00000528142 MARS2Q96GW9 593 aaKnown RBP17.7■□□□□ 0.42
VPS28-209ENST00000528142 HS3ST6Q96QI5 342 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 OR51I2Q9H344 312 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 PIPOXQ9P0Z9 390 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 AMDHD2Q9Y303 409 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 GTF3C1Q12789 2109 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 CEACAM18A8MTB9 384 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 IQCF6A8MYZ5 107 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 H3BUI4 141 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 SYNGR1O43759 233 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 FUT3P21217 361 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 DTYMKP23919 212 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 PMELP40967 661 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 PSG7Q13046 419 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 PDCD1Q15116 288 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 ALKBH6Q3KRA9 238 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 HAGHLQ6PII5 290 aaPredicted RBP17.7■□□□□ 0.42
VPS28-209ENST00000528142 BRICD5Q6PL45 260 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 OVCH2Q7RTZ1 564 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 SLX1AQ9BQ83 275 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 RANBP3Q9H6Z4 567 aaPredicted RBP17.7■□□□□ 0.42
VPS28-209ENST00000528142 ZNF701Q9NV72 531 aaPredicted RBP17.7■□□□□ 0.42
VPS28-209ENST00000528142 EDARQ9UNE0 448 aa17.7■□□□□ 0.42
VPS28-209ENST00000528142 IGHV1-18A0A0C4DH31 117 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 PRSS44E7EML9 344 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 OR2A4O95047 310 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 LAMTOR1Q6IAA8 161 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 LHFPL1Q86WI0 220 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 DOLPP1Q86YN1 238 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 OR2AK2Q8NG84 335 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 KLF14Q8TD94 323 aaPredicted RBP17.69■□□□□ 0.42
VPS28-209ENST00000528142 OR2A7Q96R45 310 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 CMSS1Q9BQ75 279 aaKnown RBP17.69■□□□□ 0.42
VPS28-209ENST00000528142 PKIBQ9C010 78 aa17.69■□□□□ 0.42
VPS28-209ENST00000528142 G3V3Q6 166 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 TRAPPC2LH3BP13 241 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 SELEP16581 610 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 TUBG1P23258 451 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 MPV17P39210 176 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 OR3A3P47888 321 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 UBE2MP61081 183 aaKnown RBP17.68■□□□□ 0.42
VPS28-209ENST00000528142 IL24Q13007 206 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 C2orf68Q2NKX9 166 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 Q5BKY6 102 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 FAM76BQ5HYJ3 339 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 OR11H4Q8NGC9 324 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 TUBG2Q9NRH3 451 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 NOP16Q9Y3C1 178 aaKnown RBP17.68■□□□□ 0.42
VPS28-209ENST00000528142 FCGR3AP08637 254 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 DHRS2Q13268 280 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 IGFBP7Q16270 282 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 CHRFAM7AQ494W8 412 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 FAHD2BQ6P2I3 314 aaPredicted RBP17.68■□□□□ 0.42
VPS28-209ENST00000528142 OR13G1Q8NGZ3 307 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms