RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 EMG1Q92979 244 aaKnown RBP13.64□□□□□ -0.23
LSM1-204ENST00000522515 HMG20AQ9NP66 347 aa13.64□□□□□ -0.23
LSM1-204ENST00000522515 WIPI2Q9Y4P8 454 aa13.64□□□□□ -0.23
LSM1-204ENST00000522515 OOEPA6NGQ2 149 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 ZNF780AO75290 641 aaPredicted RBP13.63□□□□□ -0.23
LSM1-204ENST00000522515 PAHP00439 452 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 CSTBP04080 98 aaKnown RBP13.63□□□□□ -0.23
LSM1-204ENST00000522515 PRKACAP17612 351 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 GIFP27352 417 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 RORCP51449 518 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 QRFPP83859 136 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 TEX36Q5VZQ5 186 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 CLEC2AQ6UVW9 174 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 PEG10Q86TG7 708 aaKnown RBP13.63□□□□□ -0.23
LSM1-204ENST00000522515 OR5T2Q8NGG2 359 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 C10orf105Q8TEF2 133 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 FAM46BQ96A09 425 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 BANF2Q9H503 90 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 RHOFQ9HBH0 211 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 TMEM165Q9HC07 324 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 RASL12Q9NYN1 266 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 DNAJB11Q9UBS4 358 aa13.63□□□□□ -0.23
LSM1-204ENST00000522515 TMEM14DPA8MWL7 114 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 LGALS8O00214 317 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 CRTAPO75718 401 aaPredicted RBP13.62□□□□□ -0.23
LSM1-204ENST00000522515 IGHV2-70P01814 119 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 CSF3P09919 207 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 SNRPBP14678 240 aaKnown RBP13.62□□□□□ -0.23
LSM1-204ENST00000522515 ZNF182P17025 639 aaPredicted RBP13.62□□□□□ -0.23
LSM1-204ENST00000522515 GPR6P46095 362 aaPredicted RBP13.62□□□□□ -0.23
LSM1-204ENST00000522515 SNU13P55769 128 aaKnown RBP13.62□□□□□ -0.23
LSM1-204ENST00000522515 FGF12P61328 243 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 PLA2G7Q13093 441 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 UNC119Q13432 240 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 GPR176Q14439 515 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 MICBQ29980 383 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 CLEC12BQ2HXU8 276 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 SMIM21Q3B7S5 101 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 FAM90A1Q86YD7 464 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 RAB1CQ92928 201 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 TIMD4Q96H15 378 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 DCUN1D5Q9BTE7 237 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 BPESC1Q9GZL8 116 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 NLKQ9UBE8 527 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 OR5V1Q9UGF6 321 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 TMEM272A0A1B0GTI8 110 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 LDLRAD4O15165 306 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 TFF1P04155 84 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 GTF2F2P13984 249 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 MUC1P15941 1255 aaPredicted RBP13.62□□□□□ -0.23
LSM1-204ENST00000522515 MGMTP16455 207 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 DUSP1P28562 367 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 PIGYQ3MUY2 71 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 Q5PR19 223 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 LRRC28Q86X40 367 aaPredicted RBP13.62□□□□□ -0.23
LSM1-204ENST00000522515 KRTAP1-3Q8IUG1 177 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 OSR2Q8N2R0 312 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 KCNG3Q8TAE7 436 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 CST11Q9H112 138 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 PCDHB16Q9NRJ7 776 aa13.62□□□□□ -0.23
LSM1-204ENST00000522515 IGHV4-30-2A0A087WSY4 118 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 TRAV38-1A0A0B4J264 116 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 ISPDA4D126 451 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 OR2AT4A6NND4 320 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 NDUFS8O00217 210 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 FSTL3O95633 263 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 MPIG6BO95866 241 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 PSG2P11465 335 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 MDH2P40926 338 aaKnown RBP13.61□□□□□ -0.23
LSM1-204ENST00000522515 CEBPDP49716 269 aaPredicted RBP13.61□□□□□ -0.23
LSM1-204ENST00000522515 DSCR9P59020 149 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 ZNF404Q494X3 552 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 METAP1DQ6UB28 335 aaPredicted RBP13.61□□□□□ -0.23
LSM1-204ENST00000522515 OR51T1Q8NGJ9 327 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 OR5H6Q8NGV6 325 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 LGALS14Q8TCE9 139 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 FOXC2Q99958 501 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 TMEM246Q9BRR3 403 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 PIMREGQ9BSJ6 248 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 ABRACLQ9P1F3 81 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 OR14J1Q9UGF5 321 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 ST3GAL6Q9Y274 331 aa13.61□□□□□ -0.23
LSM1-204ENST00000522515 IGKV1D-17A0A075B6S4 117 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 RFPL4AA6NLU0 287 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 VWC2LB2RUY7 222 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 RFPL4AL1F8VTS6 287 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 TMEM127O75204 238 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 KNG1P01042 644 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 GYPAP02724 150 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 AMY2BP19961 511 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 SOX6P35712 828 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 RANBP1P43487 201 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 BMXP51813 675 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 EFNB2P52799 333 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 RBM11P57052 281 aaKnown RBP13.6□□□□□ -0.23
LSM1-204ENST00000522515 ZNF146Q15072 292 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 PDCD1Q15116 288 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 STUMQ69YW2 141 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 PRSS57Q6UWY2 283 aa13.6□□□□□ -0.23
LSM1-204ENST00000522515 OR2W3Q7Z3T1 314 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms