RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SPINT2O43291 252 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 KLF7O75840 302 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 UTS2O95399 124 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 DEFA4P12838 97 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 SLC25A35Q3KQZ1 300 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 TRMT12Q53H54 448 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 OR2L13Q8N349 312 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 NRSN2Q9GZP1 204 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 RIMS4Q9H426 269 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 CMC2Q9NRP2 79 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 PTPRZ1P23471 2315 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 TRAV17A0A0B4J275 112 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 C2CD4DB7Z1M9 353 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 H3BP45 60 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 CRXO43186 299 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 EPHA8P29322 1005 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 OPRM1P35372 400 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 CYB561P49447 251 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 WNT3P56703 355 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 FAM74A3Q4VXF1 159 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 C9orf50Q5SZB4 431 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 AAED1Q7RTV5 226 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 NUFIP2Q7Z417 695 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 ZNF595Q8IYB9 648 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 MUC20Q8N307 709 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 ZDHHC22Q8N966 263 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 PIMREGQ9BSJ6 248 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 PSMG3Q9BT73 122 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 EMC6Q9BV81 110 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 P4HTMQ9NXG6 502 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 THAP10Q9P2Z0 257 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 ICE1Q9Y2F5 2266 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 LOC390937A0A1W2PQ73 354 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 SNURFLB1AK76 121 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 OR1P1Q8NH06 330 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 ADTRPQ96IZ2 230 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 RNF2Q99496 336 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 OPN4Q9UHM6 478 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 UBE2L5PA0A1B0GUS4 154 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 SLCO2B1O94956 709 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 FAM219BQ5XKK7 198 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 XAF1Q6GPH4 301 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 ACSM6Q6P461 480 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 VHLLQ6RSH7 139 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 BARHL1Q9BZE3 327 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 FOXQ1Q9C009 403 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 RBM38Q9H0Z9 239 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 METTL1Q9UBP6 276 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 FBXL17Q9UF56 701 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 LTBP1Q14766 1721 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 UBR3Q6ZT12 1888 aa7.83□□□□□ -1.16
LIMCH1-218ENST00000513024 FAM221AA4D161 298 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 ZBTB42B2RXF5 422 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 MOSPD3O75425 235 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 MYOGP15173 224 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 TCL1AP56279 114 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 CTAG1AP78358 180 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 DHRS2Q13268 280 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 FAHD1Q6P587 224 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 TMEM136Q6ZRR5 245 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 PUSL1Q8N0Z8 303 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 BHLHE23Q8NDY6 225 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 OR1L6Q8NGR2 347 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 ACY3Q96HD9 319 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 DOK1Q99704 481 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 PLEKHB1Q9UF11 243 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 MYO7AQ13402 2215 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 TLCD2A6NGC4 264 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 SERPINE3A8MV23 424 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 DUS4LO95620 317 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 SOD1P00441 154 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 TRGC2P03986 189 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 GAB4Q2WGN9 574 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 LINC00696Q6ZRV3 163 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 R3HDM4Q96D70 268 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 DHCR7Q9UBM7 475 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 TMED3Q9Y3Q3 217 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 NUP205Q92621 2012 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 LOC105371267A0A1B0GV96 52 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 M0R082 166 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 COX7A2P2O60397 106 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 GPANK1O95872 356 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 LIPFP07098 398 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 THBS4P35443 961 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 PNLIPRP2P54317 469 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 TMPRSS3P57727 454 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 RELQ04864 619 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 GAMTQ14353 236 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 NKG7Q16617 165 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 PLPPR5Q32ZL2 321 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 LGALSLQ3ZCW2 172 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 KHDC1LQ5JSQ8 128 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 PTOV1Q86YD1 416 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 SYS1Q8N2H4 156 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 OR1N1Q8NGS0 311 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 UBALD1Q8TB05 177 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 SMIM19Q96E16 107 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 SLC7A10Q9NS82 523 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 ZNF355PQ9NSJ1 428 aa7.82□□□□□ -1.16
LIMCH1-218ENST00000513024 HS3ST2Q9Y278 367 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms