RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KCNJ3P48549 501 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 ELLP55199 621 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 FOXL2P58012 376 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF260Q3ZCT1 412 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 FRZBQ92765 325 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 FAM234AQ9H0X4 552 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 DECR2Q9NUI1 292 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 FAM206AQ9NX38 181 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 TXNL1O43396 289 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 ADAP1O75689 374 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 OR2C1O95371 312 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 VAX1Q5SQQ9 334 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 SPATA46Q5T0L3 261 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 NUFIP2Q7Z417 695 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF808Q8N4W9 903 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 LRRC75AQ8NAA5 344 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 AQP3Q92482 292 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 GDF15Q99988 308 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 GCM1Q9NP62 436 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 G6PC2Q9NQR9 355 aa9.47□□□□□ -0.89
LIMCH1-205ENST00000503057 H3BMH7 237 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 IL2RAP01589 272 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 MBP02144 154 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 CALCRP30988 508 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 HTD2P86397 168 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 PDCD1Q15116 288 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 HAGHQ16775 308 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 FAM27BQ5VT28 67 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 STPG2Q8N412 459 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 OR5M9Q8NGP3 310 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 ABHD5Q8WTS1 349 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 NUDT16L1Q9BRJ7 211 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 CACFD1Q9UGQ2 172 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 TNFSF18Q9UNG2 199 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 CXCL2P19875 107 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 SNCAP37840 140 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 PRAMEF5Q5TYX0 476 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 PRAMEF6Q5VXH4 476 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 TMEM65Q6PI78 240 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 SEZ6L2Q6UXD5 910 aa9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 SAT2Q96F10 170 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF385AQ96PM9 386 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-205ENST00000503057 A0A0U1RQK1 487 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 SHOXO15266 292 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 DVL1P1P54792 670 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 THNSL2Q86YJ6 484 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 OR10P1Q8NGE3 313 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 LINC00052Q96N35 136 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 IAPPP10997 89 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 RAB4BP61018 213 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 SAP25Q8TEE9 199 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 SH3BGRL2Q9UJC5 107 aa9.46□□□□□ -0.9
LIMCH1-205ENST00000503057 ACTL6AO96019 429 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 CRYAAP02489 173 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 MT-ND4LP03901 98 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 GAS1P54826 345 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 OR2T2Q6IF00 324 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 C1orf87Q8N0U7 546 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 EDARADDQ8WWZ3 215 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 BOD1Q96IK1 185 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 GNG13Q9P2W3 67 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 POMT1Q9Y6A1 747 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 CACNA1CQ13936 2221 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 GEMIN2O14893 280 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 ADAM20O43506 726 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 CA6P23280 308 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 MIDNQ504T8 468 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 FN3KRPQ9HA64 309 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 TAAR3PQ9P1P4 343 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 TRAV17A0A0B4J275 112 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 MPPED1O15442 326 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 P2RY1P47900 373 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 TESK1Q15569 626 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 ZNF787Q6DD87 383 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 TMEM211Q6ICI0 200 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 TMEM68Q96MH6 324 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 SSX3Q99909 188 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 SOSTQ9BQB4 213 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 NPDC1Q9NQX5 325 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 FBXL17Q9UF56 701 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 TRIM77I1YAP6 450 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 SIGLEC14Q08ET2 396 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 ADIRFQ15847 76 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 DEFB109BQ30KR1 87 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 MOGAT2Q3SYC2 334 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 DHRS13Q6UX07 377 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 GLRX2Q9NS18 164 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 LHFPL6Q9Y693 200 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 ZBTB25P24278 435 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 ZNF92Q03936 586 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 COL19A1Q14993 1142 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 RAB40CQ96S21 281 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 SHARPINQ9H0F6 387 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 LPAR5Q9H1C0 372 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 ARV1Q9H2C2 271 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 KCNK7Q9Y2U2 307 aa9.45□□□□□ -0.9
LIMCH1-205ENST00000503057 IGHV3-64DA0A0J9YX35 117 aa9.44□□□□□ -0.9
LIMCH1-205ENST00000503057 M0R1B8 84 aa9.44□□□□□ -0.9
LIMCH1-205ENST00000503057 RPS11P62280 158 aaKnown RBP eCLIP9.44□□□□□ -0.9
LIMCH1-205ENST00000503057 GUK1Q16774 197 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms