RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 A0A1W2PRV1 198 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 C17orf98A8MV24 154 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 ZNF878C9JN71 531 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 IFNGP01579 166 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 ANXA2P07355 339 aaKnown RBP13.12□□□□□ -0.31
VIM-208ENST00000497849 ACKR3P25106 362 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 TTC23Q5W5X9 447 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 UNQ9370/PRO34162Q6UXP9 181 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 KCTD8Q6ZWB6 473 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 THAP5Q7Z6K1 395 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 CPOQ8IVL8 374 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 CD177Q8N6Q3 437 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 BBS1Q8NFJ9 593 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 OR11H6Q8NGC7 330 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 OR52H1Q8NGJ2 320 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 RNF170Q96K19 258 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 ZNF649Q9BS31 505 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 OR51V1Q9H2C8 321 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 FAM118AQ9NWS6 357 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 DSCAML1Q8TD84 2053 aa13.12□□□□□ -0.31
VIM-208ENST00000497849 DENRO43583 198 aaKnown RBP13.11□□□□□ -0.31
VIM-208ENST00000497849 MTRF1O75570 445 aaKnown RBP13.11□□□□□ -0.31
VIM-208ENST00000497849 LPLP06858 475 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 SPARCP09486 303 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 ZNF3P17036 446 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 AZGP1P25311 298 aaKnown RBP13.11□□□□□ -0.31
VIM-208ENST00000497849 CEBPDP49716 269 aaPredicted RBP13.11□□□□□ -0.31
VIM-208ENST00000497849 ADARB1P78563 741 aaKnown RBP13.11□□□□□ -0.31
VIM-208ENST00000497849 MED21Q13503 144 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 GFOD2Q3B7J2 385 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 FAM57BQ71RH2 274 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 PROKR2Q8NFJ6 384 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 OR2T27Q8NH04 317 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 PRR25Q96S07 402 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 NMNAT2Q9BZQ4 307 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 ZMAT5Q9UDW3 170 aaKnown RBP13.11□□□□□ -0.31
VIM-208ENST00000497849 HILPDAQ9Y5L2 63 aa13.11□□□□□ -0.31
VIM-208ENST00000497849 LOC100130705A0A1B0GUX0 176 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 PRR23D1E9PI22 279 aaPredicted RBP13.1□□□□□ -0.31
VIM-208ENST00000497849 RAMP3O60896 148 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 CST4P01036 141 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 PRR23D2P0DMB1 279 aaPredicted RBP13.1□□□□□ -0.31
VIM-208ENST00000497849 SPI1P17947 270 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 CFL1P23528 166 aaKnown RBP13.1□□□□□ -0.31
VIM-208ENST00000497849 ENTPD1P49961 510 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 EFNB1P98172 346 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 C18orf65Q6ZTR6 163 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 CALHM1Q8IU99 346 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 ZNF511Q8NB15 262 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 OR51D1Q8NGF3 324 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 OR13D1Q8NGV5 346 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 FAM81AQ8TBF8 368 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 HRASLS5Q96KN8 279 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 TEX12Q9BXU0 123 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 GMPPBQ9Y5P6 360 aa13.1□□□□□ -0.31
VIM-208ENST00000497849 RFPL4AA6NLU0 287 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 RFPL4AL1F8VTS6 287 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 ZNF593O00488 134 aaPredicted RBP13.09□□□□□ -0.31
VIM-208ENST00000497849 SLC16A6O15403 523 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 LYL1P12980 280 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 OR12D2P58182 307 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 ZNF121P58317 390 aaPredicted RBP13.09□□□□□ -0.31
VIM-208ENST00000497849 GRB2P62993 217 aaKnown RBP13.09□□□□□ -0.31
VIM-208ENST00000497849 ABCA11PQ4W5N1 156 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 FTMTQ8N4E7 242 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 Q8NFD4 153 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 OR2T4Q8NH00 348 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 TMEM163Q8TC26 289 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 PIGCQ92535 297 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 CNBD2Q96M20 576 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 P2RX4Q99571 388 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 ANKRD60Q9BZ19 345 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 OR51I2Q9H344 312 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 ABCB9Q9NP78 766 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 DNAJC27Q9NZQ0 273 aa13.09□□□□□ -0.31
VIM-208ENST00000497849 SH2D7A6NKC9 451 aaPredicted RBP13.08□□□□□ -0.32
VIM-208ENST00000497849 AMY1AP04745 511 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 AMY2AP04746 511 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 PIPP12273 146 aaPredicted RBP13.08□□□□□ -0.32
VIM-208ENST00000497849 SLC15A1P46059 708 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 GPM6AP51674 278 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 RPL23AP62750 156 aaKnown RBP13.08□□□□□ -0.32
VIM-208ENST00000497849 DYNC1I2Q13409 638 aaKnown RBP13.08□□□□□ -0.32
VIM-208ENST00000497849 IL18R1Q13478 541 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 TEX30Q5JUR7 227 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 LINC01590Q5TEZ4 76 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 ACP7Q6ZNF0 438 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 C8orf86Q6ZUL3 223 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 C16orf82Q7Z2V1 217 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 ZNF561Q8N587 486 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 OR6K6Q8NGW6 343 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 OR10A2Q9H208 303 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 LIN7BQ9HAP6 207 aa13.08□□□□□ -0.32
VIM-208ENST00000497849 MEX3AA1L020 520 aaKnown RBP13.07□□□□□ -0.32
VIM-208ENST00000497849 CCDC182A6NF36 153 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 MYF6P23409 242 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 CD24P25063 80 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 CHATP28329 748 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 HSD11B1P28845 292 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 PRDX2P32119 198 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms