RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 TRIM16LQ309B1 348 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 C11orf53Q8IXP5 236 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 SEH1LQ96EE3 360 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 HS3ST6Q96QI5 342 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 TMEM204Q9BSN7 226 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 PECRQ9BY49 303 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.35■□□□□ 0.53
SMC4-221ENST00000489573 KLK11Q9UBX7 282 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 MTFP1Q9UDX5 166 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 ELF5Q9UKW6 265 aaPredicted RBP18.35■□□□□ 0.53
SMC4-221ENST00000489573 ZDHHC8Q9ULC8 765 aa18.35■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A10PA6NDY2 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A18PA6NE21 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A16PA6NEW6 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A20PA6NIJ5 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A8PA6NJQ4 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A7PA6NKC0 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A22PA8MWA6 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A12PA8MX19 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A5PA8MXJ8 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A23PA8MXZ1 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 RBBP9O75884 186 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 IGHV1-46P01743 117 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 ACAA1P09110 424 aaPredicted RBP18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A15PP0C7V4 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A13PP0C7W8 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A14PP0C7W9 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM90A24PP0C7X0 464 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 PRKACAP17612 351 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 SRP9P49458 86 aaKnown RBP18.34■□□□□ 0.53
SMC4-221ENST00000489573 OXA1LQ15070 435 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 PNLIPRP3Q17RR3 467 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 SIGIRRQ6IA17 410 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 FAM58AQ8N1B3 248 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 CENPSQ8N2Z9 138 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 CELF2-AS1Q8N7Q2 184 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 MINDY2Q8NBR6 621 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 EMG1Q92979 244 aaKnown RBP18.34■□□□□ 0.53
SMC4-221ENST00000489573 MEGF10Q96KG7 1140 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 OR2V2Q96R30 315 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 NRIP2Q9BQI9 281 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 C11orf54Q9H0W9 315 aaPredicted RBP18.34■□□□□ 0.53
SMC4-221ENST00000489573 KCNK7Q9Y2U2 307 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 PRSS44E7EML9 344 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 GSTT2BP0CG30 244 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 APOBEC3AP31941 199 aaPredicted RBP18.34■□□□□ 0.53
SMC4-221ENST00000489573 GNG2P59768 71 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 ERVK11-1P61568 191 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 SSBP1Q04837 148 aaKnown RBP18.34■□□□□ 0.53
SMC4-221ENST00000489573 KLF9Q13886 244 aaPredicted RBP18.34■□□□□ 0.53
SMC4-221ENST00000489573 MPPED2Q15777 294 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 NKAPLQ5M9Q1 402 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 POC1AQ8NBT0 407 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 OCEL1Q9H607 264 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 UFSP2Q9NUQ7 469 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 HSF4Q9ULV5 492 aa18.34■□□□□ 0.53
SMC4-221ENST00000489573 MEIS3P1A6NDR6 274 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 SERPINE3A8MV23 424 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 NOS1APO75052 506 aaPredicted RBP18.33■□□□□ 0.52
SMC4-221ENST00000489573 ECDO95905 644 aaPredicted RBP18.33■□□□□ 0.52
SMC4-221ENST00000489573 TNFSF4P23510 183 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 CHATP28329 748 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 SNU13P55769 128 aaKnown RBP18.33■□□□□ 0.52
SMC4-221ENST00000489573 AP3S2P59780 193 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 ACTBP60709 375 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 ACTG1P63261 375 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 IL13RA2Q14627 380 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 EFNB3Q15768 340 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 ZNF672Q499Z4 452 aaPredicted RBP18.33■□□□□ 0.52
SMC4-221ENST00000489573 WDR82Q6UXN9 313 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 DCDC5Q6ZRR9 648 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 ZNF826PQ6ZT77 177 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 LINC00596Q86U02 117 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 FAM222BQ8WU58 562 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 NUDCD2Q8WVJ2 157 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 ST8SIA4Q92187 359 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 COX4I2Q96KJ9 171 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 NEDD4LQ96PU5 975 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 DIRC2Q96SL1 478 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 DHRS9Q9BPW9 319 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 PLEKHJ1Q9NW61 149 aa18.33■□□□□ 0.52
SMC4-221ENST00000489573 CISD1Q9NZ45 108 aaKnown RBP18.33■□□□□ 0.52
SMC4-221ENST00000489573 C19orf84I3L1E1 186 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 M0R233 179 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 LYRM1O43325 122 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 OR7C1O76099 320 aaPredicted RBP18.32■□□□□ 0.52
SMC4-221ENST00000489573 ADH4P08319 380 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 TNFAIP6P98066 277 aaPredicted RBP18.32■□□□□ 0.52
SMC4-221ENST00000489573 DAZAP2Q15038 168 aaPredicted RBP18.32■□□□□ 0.52
SMC4-221ENST00000489573 MPV17LQ2QL34 196 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 OLFML2AQ68BL7 652 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 MZT2BQ6NZ67 158 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 C6orf201Q7Z4U5 140 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 TRAPPC6BQ86SZ2 158 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 LILRB1Q8NHL6 650 aaPredicted RBP18.32■□□□□ 0.52
SMC4-221ENST00000489573 ITLN1Q8WWA0 313 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 C1orf123Q9NWV4 160 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 TAS2R8Q9NYW2 309 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 ZNF581Q9P0T4 197 aa18.32■□□□□ 0.52
SMC4-221ENST00000489573 IL36RNQ9UBH0 155 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms