RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PRKCDQ05655 676 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 EBI3Q14213 229 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 ZNF404Q494X3 552 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 ATP6AP1LQ52LC2 224 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 KCTD16Q68DU8 428 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 TIFABQ6ZNK6 161 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 CD302Q8IX05 232 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 SLC35G3Q8N808 338 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 BLNKQ8WV28 456 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 NELFBQ8WX92 580 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 MRPL20Q9BYC9 149 aaKnown RBP3.1□□□□□ -1.91
UPF3B-203ENST00000478840 NDEL1Q9GZM8 345 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 ZSCAN16Q9H4T2 348 aaPredicted RBP3.1□□□□□ -1.91
UPF3B-203ENST00000478840 RAB22AQ9UL26 194 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 KLF13Q9Y2Y9 288 aaPredicted RBP3.1□□□□□ -1.91
UPF3B-203ENST00000478840 PRRC2AP48634 2157 aaKnown RBP3.1□□□□□ -1.91
UPF3B-203ENST00000478840 MYO10Q9HD67 2058 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 IGKV2D-24A0A075B6R9 120 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 LOC102724200A0A096LPH7 203 aaPredicted RBP3.09□□□□□ -1.91
UPF3B-203ENST00000478840 IGKV1-6A0A0C4DH72 117 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 A8MWL6 223 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 MPZL1O95297 269 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 TNFAIP8O95379 198 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 IGKV1-39P01597 117 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 IGKV1D-39P04432 117 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 CDK1P06493 297 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 SNRPAP09012 282 aaKnown RBP3.09□□□□□ -1.91
UPF3B-203ENST00000478840 TSPOP30536 169 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 CMC4P56277 68 aaPredicted RBP3.09□□□□□ -1.91
UPF3B-203ENST00000478840 ELF3P78545 371 aaPredicted RBP3.09□□□□□ -1.91
UPF3B-203ENST00000478840 Q499Y3 187 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 ABCA11PQ4W5N1 156 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 LUZP6Q538Z0 58 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 FAM231DQ6ZW35 169 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 PRNTQ86SH4 94 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 NT5DC3Q86UY8 548 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 OR2Z1Q8NG97 314 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 OR52N1Q8NH53 320 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 TNFRSF14Q92956 283 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 ZNF251Q9BRH9 671 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 LLPHQ9BRT6 129 aaKnown RBP3.09□□□□□ -1.91
UPF3B-203ENST00000478840 SRRQ9GZT4 340 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 ASB7Q9H672 318 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 PARP11Q9NR21 331 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 SDHAF3Q9NRP4 125 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 TAS2R5Q9NYW4 299 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 C15orf41Q9Y2V0 281 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 ABCB11O95342 1321 aa3.09□□□□□ -1.91
UPF3B-203ENST00000478840 DOCK9Q9BZ29 2069 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 LOC389332A0A1B0GUA5 103 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 RBFOX3A6NFN3 312 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 KRTAP9-6A8MVA2 160 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 SULT1C2O00338 296 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 TOR1AO14656 332 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 FABP7O15540 132 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 ZNF35P13682 527 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 DMC1Q14565 340 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 OR10J3Q5JRS4 329 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 UNQ9165/PRO28630Q6UXU0 137 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 TPGS1Q6ZTW0 290 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 CRLF3Q8IUI8 442 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 SLC26A10Q8NG04 563 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 FAM57AQ8TBR7 257 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 FAM45AQ8TCE6 357 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 CCL17Q92583 94 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 PITX2Q99697 317 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 SPIN2AQ99865 258 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 SPIN2BQ9BPZ2 258 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 API5Q9BZZ5 524 aaKnown RBP3.08□□□□□ -1.92
UPF3B-203ENST00000478840 DSN1Q9H410 356 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 SND1-IT1Q9HBX3 110 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 SCML1Q9UN30 329 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 INSIG2Q9Y5U4 225 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 PUS1Q9Y606 427 aaKnown RBP eCLIP3.08□□□□□ -1.92
UPF3B-203ENST00000478840 NRCAMQ92823 1304 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 NUP214P35658 2090 aaPredicted RBP3.08□□□□□ -1.92
UPF3B-203ENST00000478840 NUP153P49790 1475 aaKnown RBP3.08□□□□□ -1.92
UPF3B-203ENST00000478840 CABIN1Q9Y6J0 2220 aa3.08□□□□□ -1.92
UPF3B-203ENST00000478840 COL27A1Q8IZC6 1860 aaPredicted RBP3.07□□□□□ -1.92
UPF3B-203ENST00000478840 DOCK8Q8NF50 2099 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 IGLV4-60A0A075B6I1 120 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 ZNF850A8MQ14 1090 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 FFAR1O14842 300 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 SLC37A4O43826 429 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 DHRS3O75911 302 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 MYO1DO94832 1006 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 LGALS7P47929 136 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 PLTPP55058 493 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 EIF4EBP1Q13541 118 aaPredicted RBP3.07□□□□□ -1.92
UPF3B-203ENST00000478840 RAB31Q13636 194 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 PIGHQ14442 188 aaPredicted RBP3.07□□□□□ -1.92
UPF3B-203ENST00000478840 LAMTOR1Q6IAA8 161 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 SHISA6Q6ZSJ9 500 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 ZNF555Q8NEP9 628 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 ACTL9Q8TC94 416 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 SUCNR1Q9BXA5 334 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 MFSD1Q9H3U5 465 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 C1orf109Q9NX04 203 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 ELP1O95163 1332 aa3.07□□□□□ -1.92
UPF3B-203ENST00000478840 ANKRD12Q6UB98 2062 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms