RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 HMGN1P05114 100 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 JUNBP17275 347 aaPredicted RBP10.04□□□□□ -0.8
SKA3-206ENST00000475251 MAGEA2P43356 314 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 THBS3P49746 956 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 ERVK11-1P61568 191 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 RPS7P62081 194 aaKnown RBP10.04□□□□□ -0.8
SKA3-206ENST00000475251 ESRRGP62508 458 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 IL24Q13007 206 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 GK3PQ14409 553 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 EDDM3AQ14507 147 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 SLX4IPQ5VYV7 408 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 TMEM42Q69YG0 159 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 OR52W1Q6IF63 320 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 ASRGL1Q7L266 308 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 RTN4RL2Q86UN3 420 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 SNX22Q96L94 193 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 RBM14Q96PK6 669 aaKnown RBP10.04□□□□□ -0.8
SKA3-206ENST00000475251 YIPF3Q9GZM5 350 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 MOB1AQ9H8S9 216 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 PAPOLBQ9NRJ5 636 aaKnown RBP10.04□□□□□ -0.8
SKA3-206ENST00000475251 NDE1Q9NXR1 346 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 NUFIP1Q9UHK0 495 aaKnown RBP10.04□□□□□ -0.8
SKA3-206ENST00000475251 GLS2Q9UI32 602 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 KLHDC2Q9Y2U9 406 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 TMEM14AQ9Y6G1 99 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 U3KQV3 271 aa10.04□□□□□ -0.8
SKA3-206ENST00000475251 DHRS7CA6NNS2 312 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 LEUTXA8MZ59 168 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 PEX2P28328 305 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 CEACAM3P40198 252 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 MYCNOSP40205 109 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 RIDAP52758 137 aaKnown RBP10.03□□□□□ -0.8
SKA3-206ENST00000475251 C9orf152Q5JTZ5 239 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 OR2T5Q6IEZ7 315 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 CCDC144NLQ6NUI1 221 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 ZNF679Q8IYX0 411 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 IQCF1Q8N6M8 205 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 OR10G2Q8NGC3 310 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 OR4P4Q8NGL7 312 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 OR2T29Q8NH02 315 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 ASB17Q8WXJ9 295 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 CEP19Q96LK0 163 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 CDRT15Q96T59 188 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 TEAD3Q99594 435 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 TEX12Q9BXU0 123 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 MYLK2Q9H1R3 596 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 GAL3ST2Q9H3Q3 398 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 MAGIXQ9H6Y5 334 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 GPR173Q9NS66 373 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 ZFP57Q9NU63 452 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 VNN3Q9NY84 501 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 SLC7A11Q9UPY5 501 aa10.03□□□□□ -0.8
SKA3-206ENST00000475251 MEX3AA1L020 520 aaKnown RBP10.02□□□□□ -0.81
SKA3-206ENST00000475251 NUDT19A8MXV4 375 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 H0YHG0 523 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 CCDC159P0C7I6 412 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 MNDAP41218 407 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 ACTR3P61158 418 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 RPL23AP62750 156 aaKnown RBP10.02□□□□□ -0.81
SKA3-206ENST00000475251 BDH1Q02338 343 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 ROM1Q03395 351 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 PPP1R8Q12972 351 aaKnown RBP10.02□□□□□ -0.81
SKA3-206ENST00000475251 SNAPC1Q16533 368 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 C16orf89Q6UX73 402 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 ETV3LQ6ZN32 361 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 TCF23Q7RTU1 214 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 TRAPPC6BQ86SZ2 158 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 ENTHD1Q8IYW4 607 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 BATF2Q8N1L9 274 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 ABHD12Q8N2K0 398 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 NIPSNAP1Q9BPW8 284 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 SEBOXQ9HB31 216 aaPredicted RBP10.02□□□□□ -0.81
SKA3-206ENST00000475251 TAS2R1Q9NYW7 299 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 UBE2J1Q9Y385 318 aaPredicted RBP10.02□□□□□ -0.81
SKA3-206ENST00000475251 DSCAML1Q8TD84 2053 aa10.02□□□□□ -0.81
SKA3-206ENST00000475251 ARRDC5A6NEK1 342 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 TTRP02766 147 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 FAM106CPP0CH98 169 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 CD24P25063 80 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 SMCPP49901 116 aaPredicted RBP10.01□□□□□ -0.81
SKA3-206ENST00000475251 MNAT1P51948 309 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 SLC35B1P78383 322 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 DOC2BQ14184 412 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 GINS1Q14691 196 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 GRK1Q15835 563 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 FAM98BQ52LJ0 330 aaKnown RBP10.01□□□□□ -0.81
SKA3-206ENST00000475251 BCL2L15Q5TBC7 163 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 C10orf99Q6UWK7 81 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 CYP2R1Q6VVX0 501 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 CPOQ8IVL8 374 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 Q8IYB0 196 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 COMMD1Q8N668 190 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 BCAS4Q8TDM0 211 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 CHPT1Q8WUD6 406 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 TFAP2CQ92754 450 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 PLEKHA1Q9HB21 404 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 ACTR3BQ9P1U1 418 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 IKZF2Q9UKS7 526 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 GTF2A1LQ9UNN4 478 aa10.01□□□□□ -0.81
SKA3-206ENST00000475251 MOB4Q9Y3A3 225 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms