RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 NLKQ9UBE8 527 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 DNAJB11Q9UBS4 358 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 FBLN5Q9UBX5 448 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 STEAP1Q9UHE8 339 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 CEPT1Q9Y6K0 416 aa12.72□□□□□ -0.37
NPHP4-205ENST00000466897 DOCK11Q5JSL3 2073 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 A0A096LNT2 108 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 SMIM31A0A1B0GVY4 71 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 F8VVB4 439 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 F8VWA3 439 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 TNFRSF13BO14836 293 aaPredicted RBP12.71□□□□□ -0.37
NPHP4-205ENST00000466897 WNT9BO14905 357 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 CD80P33681 288 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 TGFBR1P36897 503 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 SCAND1P57086 179 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 HNRNPA0Q13151 305 aaKnown RBP12.71□□□□□ -0.37
NPHP4-205ENST00000466897 RAB11BQ15907 218 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 FAM201AQ5SY85 155 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 SFXN4Q6P4A7 337 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 GLIPR1L1Q6UWM5 242 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 USP43Q70EL4 1123 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 EMG1Q92979 244 aaKnown RBP12.71□□□□□ -0.37
NPHP4-205ENST00000466897 ISOC1Q96CN7 298 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 Q96MF0 132 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 ZNF488Q96MN9 340 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 TMEM246Q9BRR3 403 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 MRI1Q9BV20 369 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 RBFOX1Q9NWB1 397 aaKnown RBP12.71□□□□□ -0.37
NPHP4-205ENST00000466897 KAAG1Q9UBP8 84 aa12.71□□□□□ -0.37
NPHP4-205ENST00000466897 CCDC168Q8NDH2 2452 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 OR2AT4A6NND4 320 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 C3orf80F5H4A9 247 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 CSTBP04080 98 aaKnown RBP12.7□□□□□ -0.38
NPHP4-205ENST00000466897 PSG2P11465 335 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 GTF2F2P13984 249 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 RBMXP38159 391 aaKnown RBP12.7□□□□□ -0.38
NPHP4-205ENST00000466897 RPS19P39019 145 aaKnown RBP12.7□□□□□ -0.38
NPHP4-205ENST00000466897 SERPINB10P48595 397 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 QRFPP83859 136 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 HOXA4Q00056 320 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-205ENST00000466897 LOXL1Q08397 574 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-205ENST00000466897 IL13RA2Q14627 380 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 AVPI1Q5T686 147 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 SFRP4Q6FHJ7 346 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-205ENST00000466897 OR2W3Q7Z3T1 314 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 LINC00596Q86U02 117 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 BOLLQ8N9W6 283 aaKnown RBP12.7□□□□□ -0.38
NPHP4-205ENST00000466897 ANGPTL6Q8NI99 470 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 SLC25A46Q96AG3 418 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 NKX3-1Q99801 234 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-205ENST00000466897 CST11Q9H112 138 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 ZNF222Q9UK12 451 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 ING4Q9UNL4 249 aa12.7□□□□□ -0.38
NPHP4-205ENST00000466897 ISPDA4D126 451 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 CEACAM18A8MTB9 384 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 TMEM14DPA8MWL7 114 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 F5H0A9 414 aaPredicted RBP12.69□□□□□ -0.38
NPHP4-205ENST00000466897 H3BMQ9 156 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 CLEC2LP0C7M8 214 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 VSIG8P0DPA2 414 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 ARSBP15848 533 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 USF1P22415 310 aaPredicted RBP12.69□□□□□ -0.38
NPHP4-205ENST00000466897 MXD1Q05195 221 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 SLC22A6Q4U2R8 563 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 SPNS3Q6ZMD2 512 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 OSR2Q8N2R0 312 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 WFDC11Q8NEX6 87 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 KCNG3Q8TAE7 436 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 PTX4Q96A99 478 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 FAM3DQ96BQ1 224 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 SDSLQ96GA7 329 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 GAL3ST1Q99999 423 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 DCSTAMPQ9H295 470 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 IFT22Q9H7X7 185 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 LIN7BQ9HAP6 207 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 ELL3Q9HB65 397 aaPredicted RBP12.69□□□□□ -0.38
NPHP4-205ENST00000466897 MIOXQ9UGB7 285 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 GLS2Q9UI32 602 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 VPS13CQ709C8 3753 aa12.69□□□□□ -0.38
NPHP4-205ENST00000466897 MYO9AB2RTY4 2548 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 IGKV1D-17A0A075B6S4 117 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 IGHV4-61A0A0C4DH41 118 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A10PA6NDY2 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A18PA6NE21 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A16PA6NEW6 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A20PA6NIJ5 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 NKX6-3A6NJ46 265 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A8PA6NJQ4 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A7PA6NKC0 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A22PA8MWA6 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A12PA8MX19 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A5PA8MXJ8 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A23PA8MXZ1 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 LDLRAD4O15165 306 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 ZNF205O95201 554 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 HTR3BO95264 441 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 HEXAP06865 529 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A15PP0C7V4 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A13PP0C7W8 464 aa12.68□□□□□ -0.38
NPHP4-205ENST00000466897 FAM90A14PP0C7W9 464 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms