RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ZNF816Q0VGE8 651 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 TMEM104Q8NE00 496 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 PTP4A3O75365 173 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 NDUFB7P17568 137 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 ZBTB25P24278 435 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 CCKARP32238 428 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 DUSP2Q05923 314 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 TMEM267Q0VDI3 215 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 CADM4Q8NFZ8 388 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 CCDC74BQ96LY2 380 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 SMDT1Q9H4I9 107 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 YTHDF2Q9Y5A9 579 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 MTCH2Q9Y6C9 303 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 ZFC3H1O60293 1989 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 PSG6Q00889 435 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 OR6X1Q8NH79 312 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 VN1R1Q9GZP7 353 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 CA10Q9NS85 328 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 NAT8Q9UHE5 227 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 C7orf77A4D0Y5 90 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 ERVH48-1M5A8F1 160 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 GPM6AP51674 278 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 TMEM183BQ1AE95 376 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 ANXA10Q9UJ72 324 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 ZNF737O75373 536 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 TOX4O94842 621 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 HNRNPA3P51991 378 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 TUSC1Q2TAM9 212 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 PRR27Q6MZM9 219 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 COMMD5Q9GZQ3 224 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 ZNF98A6NK75 572 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 J3QR89 54 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 TNFSF14O43557 240 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 DEFB109BQ30KR1 87 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 FFAR4Q5NUL3 377 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 NUBPLQ8TB37 319 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 A0A1W2PPV9 198 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 SLC31A2O15432 143 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 NMBP08949 121 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 SEC11BP0C7V7 166 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 DAOP14920 347 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 RPS16P62249 146 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 SERGEFQ9UGK8 458 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 ATAD5Q96QE3 1844 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 CRYBA1P05813 215 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 CXCL2P19875 107 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 ERVFC1-1P60608 527 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 C19orf35Q6ZS72 473 aa16.86■□□□□ 0.29
CCDC88B-204ENST00000463837 DUXBA0A1W2PPF3 345 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 POU2F2P09086 479 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 PMCHP20382 165 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 FCER1GP30273 86 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 CBLN3Q6UW01 205 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 LIAT1Q6ZQX7 453 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 ANAPC16Q96DE5 110 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 IER2Q9BTL4 223 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 PRR13Q9NZ81 148 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 KIAA1217Q5T5P2 1943 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 DGAT2L6Q6ZPD8 337 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 ATP5SQ99766 215 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 MANBALQ9NQG1 85 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 SOX15O60248 233 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 FAM157BP0CG42 384 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 DRD3P35462 400 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 TRA2AQ13595 282 aaKnown RBP eCLIP16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 ETFDHQ16134 617 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 HLA-BQ31612 363 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 ASB5Q8WWX0 329 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 FAM117AQ9C073 453 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 A0A1W2PNV4 684 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 H3BMH7 237 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 HPP00738 406 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 HYAL1Q12794 435 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 ZNF273Q14593 569 aa16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 ALKBH3Q96Q83 286 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-204ENST00000463837 TRAV8-7A0A075B6U6 113 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 LSM6P62312 80 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 HES1Q14469 280 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 ZNF718Q3SXZ3 478 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 OR8B12Q8NGG6 310 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 OR10V1Q8NGI7 309 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 MBD1Q9UIS9 605 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 HSBP1O75506 76 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 GABRG2P18507 467 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 SULT1A1P50225 295 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 LSM11P83369 360 aaKnown RBP eCLIP16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 MS4A10Q96PG2 267 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 MFSD2BA6NFX1 497 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 CNIH1O95406 144 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 TRAT1Q6PIZ9 186 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 CES1P1Q9UKY3 287 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 F5P12259 2224 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 SERTM2A0A1B0GWG4 89 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 FAM122AQ96E09 287 aa16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 COL5A3P25940 1745 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-204ENST00000463837 GPR37O15354 613 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 CRYABP02511 175 aaKnown RBP16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 FBP1P09467 338 aa16.83■□□□□ 0.29
CCDC88B-204ENST00000463837 RPL29P47914 159 aaKnown RBP16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms