RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 PRO0628Q9UI54 55 aa2.55□□□□□ -2
USH2A-203ENST00000463147 PLXNB3Q9ULL4 1909 aa2.55□□□□□ -2
USH2A-203ENST00000463147 LRRC42Q9Y546 428 aa2.55□□□□□ -2
USH2A-203ENST00000463147 ENPP4Q9Y6X5 453 aa2.55□□□□□ -2
USH2A-203ENST00000463147 KIAA1671Q9BY89 1806 aa2.54□□□□□ -2
USH2A-203ENST00000463147 SMARCA2P51531 1590 aa2.54□□□□□ -2
USH2A-203ENST00000463147 IGLV4-69A0A075B6H9 119 aa2.54□□□□□ -2
USH2A-203ENST00000463147 LOC102724200A0A096LPH7 203 aaPredicted RBP2.54□□□□□ -2
USH2A-203ENST00000463147 OR2AT4A6NND4 320 aa2.54□□□□□ -2
USH2A-203ENST00000463147 F8VZ95 297 aa2.54□□□□□ -2
USH2A-203ENST00000463147 FFAR1O14842 300 aa2.54□□□□□ -2
USH2A-203ENST00000463147 TOX3O15405 576 aaPredicted RBP2.54□□□□□ -2
USH2A-203ENST00000463147 FGF16O43320 207 aa2.54□□□□□ -2
USH2A-203ENST00000463147 CHST10O43529 356 aa2.54□□□□□ -2
USH2A-203ENST00000463147 NIPSNAP2O75323 286 aa2.54□□□□□ -2
USH2A-203ENST00000463147 MYO1DO94832 1006 aa2.54□□□□□ -2
USH2A-203ENST00000463147 ADRA2AP08913 450 aa2.54□□□□□ -2
USH2A-203ENST00000463147 ZNF688P0C7X2 276 aa2.54□□□□□ -2
USH2A-203ENST00000463147 TGFBR1P36897 503 aa2.54□□□□□ -2
USH2A-203ENST00000463147 CXCL12P48061 93 aa2.54□□□□□ -2
USH2A-203ENST00000463147 GCLMP48507 274 aa2.54□□□□□ -2
USH2A-203ENST00000463147 GTF2A1P52655 376 aaPredicted RBP2.54□□□□□ -2
USH2A-203ENST00000463147 EMP2P54851 167 aa2.54□□□□□ -2
USH2A-203ENST00000463147 BAXQ07812 192 aa2.54□□□□□ -2
USH2A-203ENST00000463147 BNIP2Q12982 314 aa2.54□□□□□ -2
USH2A-203ENST00000463147 ACTBL2Q562R1 376 aa2.54□□□□□ -2
USH2A-203ENST00000463147 NIPAL1Q6NVV3 410 aa2.54□□□□□ -2
USH2A-203ENST00000463147 USP50Q70EL3 339 aaPredicted RBP2.54□□□□□ -2
USH2A-203ENST00000463147 TMEM256Q8N2U0 113 aa2.54□□□□□ -2
USH2A-203ENST00000463147 OR5T1Q8NG75 326 aa2.54□□□□□ -2
USH2A-203ENST00000463147 OR4M2Q8NGB6 313 aa2.54□□□□□ -2
USH2A-203ENST00000463147 ZNF461Q8TAF7 563 aa2.54□□□□□ -2
USH2A-203ENST00000463147 DYNC2LI1Q8TCX1 351 aa2.54□□□□□ -2
USH2A-203ENST00000463147 HGDQ93099 445 aa2.54□□□□□ -2
USH2A-203ENST00000463147 SNF8Q96H20 258 aa2.54□□□□□ -2
USH2A-203ENST00000463147 PGLYRP3Q96LB9 341 aa2.54□□□□□ -2
USH2A-203ENST00000463147 BIRC8Q96P09 236 aa2.54□□□□□ -2
USH2A-203ENST00000463147 QKIQ96PU8 341 aaKnown RBP eCLIP2.54□□□□□ -2
USH2A-203ENST00000463147 POTEKPQ9BYX7 375 aa2.54□□□□□ -2
USH2A-203ENST00000463147 HDHD2Q9H0R4 259 aa2.54□□□□□ -2
USH2A-203ENST00000463147 ZNF430Q9H8G1 570 aaPredicted RBP2.54□□□□□ -2
USH2A-203ENST00000463147 ASCL3Q9NQ33 180 aa2.54□□□□□ -2
USH2A-203ENST00000463147 NUP214P35658 2090 aaPredicted RBP2.54□□□□□ -2
USH2A-203ENST00000463147 DOCK8Q8NF50 2099 aa2.54□□□□□ -2
USH2A-203ENST00000463147 COL27A1Q8IZC6 1860 aaPredicted RBP2.54□□□□□ -2
USH2A-203ENST00000463147 MUC19Q7Z5P9 8384 aa2.53□□□□□ -2
USH2A-203ENST00000463147 ELP1O95163 1332 aa2.53□□□□□ -2
USH2A-203ENST00000463147 EIF1BO60739 113 aaKnown RBP2.53□□□□□ -2
USH2A-203ENST00000463147 E2F6O75461 281 aa2.53□□□□□ -2
USH2A-203ENST00000463147 CCNKO75909 580 aa2.53□□□□□ -2
USH2A-203ENST00000463147 HLA-DQB1P01920 261 aa2.53□□□□□ -2
USH2A-203ENST00000463147 ZNF3P17036 446 aa2.53□□□□□ -2
USH2A-203ENST00000463147 MAGP20916 626 aa2.53□□□□□ -2
USH2A-203ENST00000463147 ME2P23368 584 aa2.53□□□□□ -2
USH2A-203ENST00000463147 OPRK1P41145 380 aa2.53□□□□□ -2
USH2A-203ENST00000463147 EIF1P41567 113 aaKnown RBP2.53□□□□□ -2
USH2A-203ENST00000463147 LGALS7P47929 136 aa2.53□□□□□ -2
USH2A-203ENST00000463147 MNAT1P51948 309 aa2.53□□□□□ -2
USH2A-203ENST00000463147 MAPRE2Q15555 327 aa2.53□□□□□ -2
USH2A-203ENST00000463147 TMEM249Q2WGJ8 235 aa2.53□□□□□ -2
USH2A-203ENST00000463147 TEX30Q5JUR7 227 aa2.53□□□□□ -2
USH2A-203ENST00000463147 ZFP1Q6P2D0 407 aa2.53□□□□□ -2
USH2A-203ENST00000463147 Q6P435 159 aa2.53□□□□□ -2
USH2A-203ENST00000463147 GUSBP11Q6P575 273 aa2.53□□□□□ -2
USH2A-203ENST00000463147 TPGS1Q6ZTW0 290 aa2.53□□□□□ -2
USH2A-203ENST00000463147 RNF10Q8N5U6 811 aaKnown RBP2.53□□□□□ -2
USH2A-203ENST00000463147 ESR2Q92731 530 aa2.53□□□□□ -2
USH2A-203ENST00000463147 TMEM56Q96MV1 263 aa2.53□□□□□ -2
USH2A-203ENST00000463147 RSG1Q9BU20 258 aa2.53□□□□□ -2
USH2A-203ENST00000463147 LCE3DQ9BYE3 92 aa2.53□□□□□ -2
USH2A-203ENST00000463147 SLC19A3Q9BZV2 496 aa2.53□□□□□ -2
USH2A-203ENST00000463147 DSN1Q9H410 356 aa2.53□□□□□ -2
USH2A-203ENST00000463147 RDH14Q9HBH5 336 aa2.53□□□□□ -2
USH2A-203ENST00000463147 RBM22Q9NW64 420 aaKnown RBP eCLIP2.53□□□□□ -2
USH2A-203ENST00000463147 KTN1Q86UP2 1357 aaKnown RBP2.52□□□□□ -2.01
USH2A-203ENST00000463147 A0A1B0GTI1 187 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 CRXO43186 299 aaPredicted RBP2.52□□□□□ -2.01
USH2A-203ENST00000463147 RBFOX2O43251 390 aaKnown RBP eCLIP2.52□□□□□ -2.01
USH2A-203ENST00000463147 SNAP29O95721 258 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 LINC00869P0C866 280 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 RPA3P35244 121 aaPredicted RBP2.52□□□□□ -2.01
USH2A-203ENST00000463147 COILP38432 576 aaPredicted RBP2.52□□□□□ -2.01
USH2A-203ENST00000463147 PSMB2P49721 201 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 ACOT2P49753 483 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 RPL14P50914 215 aaKnown RBP2.52□□□□□ -2.01
USH2A-203ENST00000463147 PSMD7P51665 324 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 CLDN12P56749 244 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 MYL6P60660 151 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 PPP1CAP62136 330 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 RPL10AP62906 217 aaKnown RBP2.52□□□□□ -2.01
USH2A-203ENST00000463147 Q499Y3 187 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 LUZP6Q538Z0 58 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 CLLU1OSQ5K130 101 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 CDKL4Q5MAI5 379 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 IDNKQ5T6J7 187 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 SSX7Q7RTT5 188 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 LINC01551Q86U37 167 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 BLIDQ8IZY5 108 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 SLC25A29Q8N8R3 303 aa2.52□□□□□ -2.01
USH2A-203ENST00000463147 LINC01560Q8TB33 94 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms