RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 C12orf54Q6X4T0 127 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 C1orf122Q6ZSJ8 110 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 SERPINA12Q8IW75 414 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 OR5D14Q8NGL3 314 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 OR13C9Q8NGT0 318 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 EMG1Q92979 244 aaKnown RBP12.5□□□□□ -0.41
LIMS3-201ENST00000437679 SLC25A28Q96A46 364 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 TMEM80Q96HE8 168 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 PDCD1LG2Q9BQ51 273 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 FAM234AQ9H0X4 552 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 ZCCHC4Q9H5U6 513 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 NOX4Q9NPH5 578 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 SIRT7Q9NRC8 400 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 DIMT1Q9UNQ2 313 aaKnown RBP12.5□□□□□ -0.41
LIMS3-201ENST00000437679 DHDHQ9UQ10 334 aa12.5□□□□□ -0.41
LIMS3-201ENST00000437679 A0A1W2PPH5 198 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 F8VVB4 439 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 F8VWA3 439 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 CLDN34H7C241 214 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 MT-ND2P03891 347 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 CHRM2P08172 466 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 GUCA2AQ02747 115 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 COL10A1Q03692 680 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 SLC34A1Q06495 639 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 SLC9A3R2Q15599 337 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 CCDC58Q4VC31 144 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 OR2G6Q5TZ20 316 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 RPL22L1Q6P5R6 122 aaKnown RBP12.49□□□□□ -0.41
LIMS3-201ENST00000437679 METAP1DQ6UB28 335 aaPredicted RBP12.49□□□□□ -0.41
LIMS3-201ENST00000437679 PDZD9Q8IXQ8 264 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 Q8N7P7 452 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 C1orf147Q96MC9 270 aaPredicted RBP12.49□□□□□ -0.41
LIMS3-201ENST00000437679 PRDM13Q9H4Q3 707 aa12.49□□□□□ -0.41
LIMS3-201ENST00000437679 METTL8Q9H825 291 aaKnown RBP12.49□□□□□ -0.41
LIMS3-201ENST00000437679 TMEM89A2RUT3 159 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 EFCAB10A6NFE3 127 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 SPRY1O43609 319 aaPredicted RBP12.48□□□□□ -0.41
LIMS3-201ENST00000437679 ALX3O95076 343 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 TK1P04183 234 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 RNASE1P07998 156 aaKnown RBP12.48□□□□□ -0.41
LIMS3-201ENST00000437679 HCKP08631 526 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 GNAO1P09471 354 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 BCL3P20749 454 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 EEF1B2P24534 225 aaKnown RBP12.48□□□□□ -0.41
LIMS3-201ENST00000437679 RPL31P62899 125 aaKnown RBP12.48□□□□□ -0.41
LIMS3-201ENST00000437679 PDZK1IP1Q13113 114 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 CDK5R1Q15078 307 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 NCR3LG1Q68D85 454 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 PARP16Q8N5Y8 322 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 ASCC1Q8N9N2 400 aaKnown RBP12.48□□□□□ -0.41
LIMS3-201ENST00000437679 TBC1D15Q8TC07 691 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 GGHQ92820 318 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 RFT1Q96AA3 541 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 C19orf12Q9NSK7 152 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 BABAM2Q9NXR7 383 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 NKX1-2Q9UD57 310 aaPredicted RBP12.48□□□□□ -0.41
LIMS3-201ENST00000437679 GLS2Q9UI32 602 aa12.48□□□□□ -0.41
LIMS3-201ENST00000437679 ERICH4A6NGS2 130 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 K7N7A8 449 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 HOXA3O43365 443 aaPredicted RBP12.47□□□□□ -0.41
LIMS3-201ENST00000437679 SULT1B1O43704 296 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 CD2P06729 351 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 PIPP12273 146 aaPredicted RBP12.47□□□□□ -0.41
LIMS3-201ENST00000437679 NPBWR2P48146 333 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 ST3GAL4Q11206 333 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 Q6YL49 198 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 FAM58AQ8N1B3 248 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 OR4M1Q8NGD0 313 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 OR5D13Q8NGL4 314 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 OR52N1Q8NH53 320 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 GPR148Q8TDV2 347 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 SPACA5Q96QH8 159 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 RBFOX1Q9NWB1 397 aaKnown RBP12.47□□□□□ -0.41
LIMS3-201ENST00000437679 CNOT2Q9NZN8 540 aaKnown RBP12.47□□□□□ -0.41
LIMS3-201ENST00000437679 CLEC2DQ9UHP7 191 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 FAM96BQ9Y3D0 163 aa12.47□□□□□ -0.41
LIMS3-201ENST00000437679 hCG_1809904A0A1W2PP81 198 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 A0A1W2PPE2 198 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 A0A1W2PR64 198 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 A0A1W2PRV1 198 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 RNASEK-C17orf49H0YIS7 233 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 HAX1O00165 279 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 MAGEB3O15480 346 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 OGG1O15527 345 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 ANGPTL7O43827 346 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 HAND1O96004 215 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 PRKACAP17612 351 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 RAB3AP20336 220 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 SOX2P48431 317 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 COMPP49747 757 aaPredicted RBP12.46□□□□□ -0.41
LIMS3-201ENST00000437679 PRB3Q04118 309 aaPredicted RBP12.46□□□□□ -0.41
LIMS3-201ENST00000437679 KLRD1Q13241 179 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 TMEM200BQ69YZ2 307 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 XAF1Q6GPH4 301 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 GDPD3Q7L5L3 318 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 STX19Q8N4C7 294 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 BPIFB6Q8NFQ5 453 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 OR5D18Q8NGL1 313 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 RPS4Y2Q8TD47 263 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 TFAP2CQ92754 450 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms