RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 HOXB3P14651 431 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF26P17031 533 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-207ENST00000436346 LOC102723971A0A1B0GUV8 181 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 EPXP11678 715 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 RAB5AP20339 215 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 CALCRP30988 508 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 B4GALNT1Q00973 533 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 GAMTQ14353 236 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 OR2A5Q96R48 311 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 ARHGDIGQ99819 225 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 DCAF16Q9NXF7 216 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 APELAP0DMC3 54 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 LYZP61626 148 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 HOXA4Q00056 320 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 IGFBP7Q16270 282 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 CD82P27701 267 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 RTN4IP1Q8WWV3 396 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 SIGLEC11Q96RL6 698 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 SRRQ9GZT4 340 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF205O95201 554 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 ACP1P24666 158 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 FAM27D1Q5T7N8 215 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF793Q6ZN11 406 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 OR52B4Q8NGK2 314 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 ARHGAP5-AS1Q96IT6 56 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 TMPRSS5Q9H3S3 457 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 MBTPS2O43462 519 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 OPN1MWP04001 364 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 OPN1MW2P0DN77 364 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 OPN1MW3P0DN78 364 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 CEACAM3P40198 252 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 OR1L4Q8NGR5 311 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 PLSCR3Q9NRY6 295 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 TCFL5Q9UL49 500 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 OR2M5A3KFT3 312 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 MPGP29372 298 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 LIMK1P53667 647 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 SLC25A35Q3KQZ1 300 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 OR4C16Q8NGL9 310 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 UCK1Q9HA47 277 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 DNAJB12Q9NXW2 375 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 FOXJ3Q9UPW0 622 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 IGHV3-43A0A0B4J1X8 118 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 ADAM20O43506 726 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 IGHV3-43DP0DP04 118 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 MAGEA5P43359 124 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 PMP22Q01453 160 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 KISS1Q15726 138 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 TGIF2LXQ8IUE1 241 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 C9orf172C9J069 976 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 AGFG2O95081 481 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 TPPP2P59282 170 aa10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 DHRS7BQ6IAN0 325 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-207ENST00000436346 hADV38S2A0JD32 116 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 GABRB1P18505 474 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 PTTG1IPP53801 180 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 GPNMBQ14956 572 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 JMJD6Q6NYC1 403 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 MAMSTRQ6ZN01 415 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 ZFP64Q9NPA5 681 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 A0A1W2PPQ1 181 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 ACSM4P0C7M7 580 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 CDK5Q00535 292 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 OR5M8Q8NGP6 311 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 BCL2L10Q9HD36 194 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 MUC6Q6W4X9 2439 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF320A2RRD8 509 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 H3BMH7 237 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 CRXO43186 299 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 DHHO43323 396 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 SYS1Q8N2H4 156 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 MRGPRDQ8TDS7 321 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 RXFP4Q8TDU9 374 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 KCNMB2Q9Y691 235 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 OR2B8PP59922 312 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 C2CD4CQ8TF44 421 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 CCL21O00585 134 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 LALBAP00709 142 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 DYNC2LI1Q8TCX1 351 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 RAB1CQ92928 201 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 TRAV38-1A0A0B4J264 116 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 RND1Q92730 232 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 ATXN7O15265 892 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 PDCD1Q15116 288 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 LILRB1Q8NHL6 650 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 SPNS1Q9H2V7 528 aa10.74□□□□□ -0.69
CCDC88A-207ENST00000436346 TRAV1-2A0A0B4J238 106 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF716A6NP11 495 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 SLC25A5P05141 298 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 GALNSP34059 522 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 PTGFRP43088 359 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 OXA1LQ15070 435 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 C16orf47Q6ZP98 133 aaPredicted RBP10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 TMUB1Q9BVT8 246 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 PLXNA4Q9HCM2 1894 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 CST7O76096 145 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 NGFP01138 241 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 RPL7P18124 248 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ZNF441Q8N8Z8 693 aa10.73□□□□□ -0.69
CCDC88A-207ENST00000436346 ORAI1Q96D31 301 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms