RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 DGUOKQ16854 277 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 BATF2Q8N1L9 274 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 ZNF561Q8N587 486 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 RPS4Y2Q8TD47 263 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 EMG1Q92979 244 aaKnown RBP9.48□□□□□ -0.89
COL28A1-203ENST00000435823 DMRTB1Q96MA1 342 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 PCGF1Q9BSM1 259 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 DCTN5Q9BTE1 182 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 CNTD2Q9H8S5 307 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 MTCH1Q9NZJ7 389 aa9.48□□□□□ -0.89
COL28A1-203ENST00000435823 SIRT4Q9Y6E7 314 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-203ENST00000435823 TRAV40A0A0B4J280 105 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 FCN3O75636 299 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 TOX4O94842 621 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 INMTO95050 263 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 CDK1P06493 297 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 PDZK1IP1Q13113 114 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 YIF1BQ5BJH7 314 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 RNLSQ5VYX0 342 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 DMKNQ6E0U4 476 aaPredicted RBP9.47□□□□□ -0.89
COL28A1-203ENST00000435823 CMTM4Q8IZR5 234 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 FGFRL1Q8N441 504 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 NANOGP1Q8N7R0 232 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 ZFP41Q8N8Y5 198 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 ZNF485Q8NCK3 441 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 ZNRF1Q8ND25 227 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 TMEM158Q8WZ71 300 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 RGP1Q92546 391 aaPredicted RBP9.47□□□□□ -0.89
COL28A1-203ENST00000435823 GHSRQ92847 366 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 RFT1Q96AA3 541 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 WDFY2Q96P53 400 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 JMJD8Q96S16 334 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 MND1Q9BWT6 205 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 SUCNR1Q9BXA5 334 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 MS4A7Q9GZW8 240 aaPredicted RBP9.47□□□□□ -0.89
COL28A1-203ENST00000435823 TAS2R4Q9NYW5 299 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 ONECUT1Q9UBC0 465 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 RAB26Q9ULW5 256 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 MAB21L2Q9Y586 359 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 PCDHGB5Q9Y5G0 923 aa9.47□□□□□ -0.89
COL28A1-203ENST00000435823 TRBV23-1A0A0A0MS06 115 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 A0A1W2PQ09 198 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 RNF212BA8MTL3 300 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 SPRY1O43609 319 aaPredicted RBP9.46□□□□□ -0.9
COL28A1-203ENST00000435823 CHRM2P08172 466 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 IGHV4-38-2P0DP08 117 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 TMEM225BP0DP42 221 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 CEBPDP49716 269 aaPredicted RBP9.46□□□□□ -0.9
COL28A1-203ENST00000435823 ARF6P62330 175 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 PPP3R1P63098 170 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 BDH1Q02338 343 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 PDCD1Q15116 288 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 KISS1Q15726 138 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 Q499Y3 187 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 KLF17Q5JT82 389 aaPredicted RBP9.46□□□□□ -0.9
COL28A1-203ENST00000435823 LCE2CQ5TA81 110 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 GPR157Q5UAW9 335 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 RBMS3Q6XE24 437 aaKnown RBP9.46□□□□□ -0.9
COL28A1-203ENST00000435823 FAM58AQ8N1B3 248 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 CD177Q8N6Q3 437 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 KIR3DL3Q8N743 410 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 LY6G5BQ8NDX9 201 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 OR5D18Q8NGL1 313 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 C8orf46Q8TAG6 207 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 C22orf15Q8WYQ4 148 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 TMEM106AQ96A25 262 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 CNBD2Q96M20 576 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 SPACA5Q96QH8 159 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 GPER1Q99527 375 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 SLC6A7Q99884 636 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 CDCA4Q9BXL8 241 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 CKLFQ9UBR5 152 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF69Q9UC07 566 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 GLS2Q9UI32 602 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 KPTNQ9Y664 436 aa9.46□□□□□ -0.9
COL28A1-203ENST00000435823 IGHV3OR16-10A0A075B7F0 116 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 TRBV5-5A0A0J9YX44 114 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 PNMA8CA0A1B0GUJ8 204 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 A0A1W2PPH5 198 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 F8VVB4 439 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 F8VWA3 439 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 RGS10O43665 173 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 ANGPTL7O43827 346 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 RGS9O75916 674 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-203ENST00000435823 KDM4BO94953 1096 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 HAND1O96004 215 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 CD1AP06126 327 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 PRKACAP17612 351 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 CELP19835 753 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 BCL3P20749 454 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 BPIFB3P59826 476 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 SLC35A2P78381 396 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 COL10A1Q03692 680 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 BLMHQ13867 455 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 SPIN3Q5JUX0 258 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 USP43Q70EL4 1123 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 SATL1Q86VE3 508 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 SAXO1Q8IYX7 474 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 FAM185AQ8N0U4 392 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 ASCC1Q8N9N2 400 aaKnown RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms